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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTCCCGCAAGTCAAGGTGCCTTTTCGTTGAGCATCGTAAGCTAGTCTCCTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacggatactgctgtttgaggacaaccggttccgtgcgggccgcgggctgagtttggacttcaaaatgctcgctgccgctcgcctgtttgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP01014
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10771438|gb|AV622261.1|AV622261
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|6541420|gb|AV387204.1|AV387204
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|22049247|gb|BQ808682.1|BQ808682
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|16072805|gb|BI874801.1|BI874801
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GNAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagG-AAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|6545677|gb|AV391461.1|AV391461
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|15699394|gb|BI723699.1|BI723699
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|6547330|gb|AV393114.1|AV393114
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|9459947|gb|BE452988.1|BE452988
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|15703513|gb|BI727818.1|BI727818
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|6551764|gb|AV397548.1|AV397548
EST:     CTCACGTCATCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|22049248|gb|BQ808683.1|BQ808683
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10770536|gb|AV621361.1|AV621361
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|15702070|gb|BI726375.1|BI726375
EST:     CTCACGTCTTCCTCGCGGCCTATCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10772320|gb|AV623143.1|AV623143
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10768240|gb|AV619065.1|AV619065
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10127282|gb|BE725986.1|BE725986
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10768505|gb|AV619330.1|AV619330
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|22075401|gb|BQ824177.1|BQ824177
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|22068374|gb|BQ818313.1|BQ818313
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|22074620|gb|BQ823544.1|BQ823544
EST:     TCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCTC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: TCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCC-Cgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10775158|gb|AV625981.1|AV625981
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|15367881|gb|BI527307.1|BI527307
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10771495|gb|AV622318.1|AV622318
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10774206|gb|AV625029.1|AV625029
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10778324|gb|AV635004.1|AV635004
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|9210852|gb|BE337767.1|BE337767
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10772660|gb|AV623483.1|AV623483
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|22069490|gb|BQ819062.1|BQ819062
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10781137|gb|AV637817.1|AV637817
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|49462901|gb|BP090814.1|BP090814
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|49460070|gb|BP087983.1|BP087983
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|15371920|gb|BI531346.1|BI531346
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10774553|gb|AV625376.1|AV625376
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10786290|gb|AV642962.1|AV642962
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10780041|gb|AV636721.1|AV636721
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10779383|gb|AV636063.1|AV636063
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|9210722|gb|BE337637.1|BE337637
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|22054373|gb|BQ811326.1|BQ811326
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|23360809|gb|BU648629.1|BU648629
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10782783|gb|AV639455.1|AV639455
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|15699392|gb|BI723697.1|BI723697
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|49460858|gb|BP088771.1|BP088771
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|22068376|gb|BQ818315.1|BQ818315
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10774359|gb|AV625182.1|AV625182
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCNGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCC-GCTACCTACAAGGACAATCAGG
EST: gi|6544390|gb|AV390174.1|AV390174
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|15699393|gb|BI723698.1|BI723698
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|14226094|gb|BG844910.1|BG844910
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10779865|gb|AV636545.1|AV636545
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|49458936|gb|BP086849.1|BP086849
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10779845|gb|AV636525.1|AV636525
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|6542757|gb|AV388541.1|AV388541
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|6540887|gb|AV386671.1|AV386671
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|6547142|gb|AV392926.1|AV392926
EST:     CTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10127537|gb|BE726241.1|BE726241
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|22059526|gb|BQ813480.1|BQ813480
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|14240430|gb|BG859246.1|BG859246
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG
EST: gi|10779351|gb|AV636031.1|AV636031
EST:     CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCC                         GAAAGGTCCCGCTACCTACAAGGACAATCAGG
genomic: CTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacg ... ctgtttgcagGAAAGGTCCCGCTACCTACAAGGACAATCAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGTCCCGCAAGTCAAGGTGCCTTTTCGTTGAGCATCGTAAGCTAGTCTCCTCACGTCTTCCTCGCGGCCTACCTTCATAATGGCGCAAGCAACCAGCCCgtgagttacggatactgctgtttgaggacaaccggttccgtgcgggccgcgggctgagtttggacttcaaaatgctcgctgccgctcgcctgtttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA