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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGGTGATTGACTTGCCCTTCCAACTGCCCAATGGCCGGCCCACCGCTCTACGCGTGAGCCTGCCTTCGCACTTTCCCCAGgtaggcaaagcctcttttaagctttcgcgatgttctcctagcatgtccacttccgtttacgacaatgaagtgctgccgtgtgccatggttcccgctctagattcgttatccttgactgcgagccccattcgccctcgtcccccgccctgccctgctttaccgcactccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP00965
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14232532|gb|BG851348.1|BG851348
EST:     ATGGCCGGCCCACCGCTCTACGCGTGAGCCTGCCTTCGCACTTTCCCCAG                         GACCACCCAGTCCTGTGTGTGGTTGTGCCGCTCCAGCACCCAGCAGTGGAC
genomic: ATGGCCGGCCCACCGCTCTACGCGTGAGCCTGCCTTCGCACTTTCCCCAGgtaggcaaag ... cactccgcagGACCACCCAGTCCTGTGTGTGGTTGTGCCGCTCCAGCACCCAGCAGTGGAC
EST: gi|6547806|gb|AV393590.1|AV393590
EST:     ATGGCCGGACCACCGCTCTACGCGTGAGCCTGCCTTCGCACTTTCCCCAG                         GAGCACCCAGTCCTGTGTGTGG
genomic: ATGGCCGGCCCACCGCTCTACGCGTGAGCCTGCCTTCGCACTTTCCCCAGgtaggcaaag ... cactccgcagGACCACCCAGTCCTGTGTGTGG
EST: gi|15702056|gb|BI726361.1|BI726361
EST:     ATGGCCGGCCCACCGCTCTACGCGTGAGCCTGCCTTCGCACTTTCCCCAG                         GACCACCCAGTCCTGTGTGTGGTTGTGCCGCTCCAGCACCCAGCAGTGGAC
genomic: ATGGCCGGCCCACCGCTCTACGCGTGAGCCTGCCTTCGCACTTTCCCCAGgtaggcaaag ... cactccgcagGACCACCCAGTCCTGTGTGTGGTTGTGCCGCTCCAGCACCCAGCAGTGGAC
EST: gi|23366818|gb|BU654637.1|BU654637
EST:     ATGGCCGGCCCACCGCTCTACGCGTGAGCCTGCCTTCGCACTTTCCCCAG                         GACCACCCAGTCCTGTGTGTGGTTGTGCCGCTCCAGCACCCAGCAGTGGAC
genomic: ATGGCCGGCCCACCGCTCTACGCGTGAGCCTGCCTTCGCACTTTCCCCAGgtaggcaaag ... cactccgcagGACCACCCAGTCCTGTGTGTGGTTGTGCCGCTCCAGCACCCAGCAGTGGAC
EST: gi|15699177|gb|BI723482.1|BI723482
EST:     ATGGCCGGCCCACCGCTCTACGCGTGAGCCTGCCTTCGCACTTTCCCCAG                         GACCACCCAGTCCTGTGTGTGGTTGTGCCGCTCCAGCACCCAGCAGTGGAC
genomic: ATGGCCGGCCCACCGCTCTACGCGTGAGCCTGCCTTCGCACTTTCCCCAGgtaggcaaag ... cactccgcagGACCACCCAGTCCTGTGTGTGGTTGTGCCGCTCCAGCACCCAGCAGTGGAC
EST: gi|15699176|gb|BI723481.1|BI723481
EST:     ATGGCCGGCCCACCGCTCTACGCGTGAGCCTGCCTTCGCACTTTCCCCAG                         GACCACCCAGTCCTGTGTGTGGTTGTGCCGCTCCAGCACCCAGCAGTGGAC
genomic: ATGGCCGGCCCACCGCTCTACGCGTGAGCCTGCCTTCGCACTTTCCCCAGgtaggcaaag ... cactccgcagGACCACCCAGTCCTGTGTGTGGTTGTGCCGCTCCAGCACCCAGCAGTGGAC
EST: gi|15699178|gb|BI723483.1|BI723483
EST:     ATGGCCGGCCCACCGCTCTACGCGTGAGCCTGCCTTCGCACTTTCCCCAG                         GACCACCCAGTCCTGTGTGTGGTTGTGCCGCTCCAGCACCCAGCAGTGGAC
genomic: ATGGCCGGCCCACCGCTCTACGCGTGAGCCTGCCTTCGCACTTTCCCCAGgtaggcaaag ... cactccgcagGACCACCCAGTCCTGTGTGTGGTTGTGCCGCTCCAGCACCCAGCAGTGGAC
EST: gi|14232533|gb|BG851349.1|BG851349
EST:     ATGGCCGGCCCACCGCTCTACGCGTGAGCCTGCCTTCGCACTTTCCCCAG                         GACCACCCAGTCCTGTGTGTGGTTGTGCCGCTCCAGCACCCAGCAGTGGAC
genomic: ATGGCCGGCCCACCGCTCTACGCGTGAGCCTGCCTTCGCACTTTCCCCAGgtaggcaaag ... cactccgcagGACCACCCAGTCCTGTGTGTGGTTGTGCCGCTCCAGCACCCAGCAGTGGAC