1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTGGGAGTAGAGCCAGCGACCCCAGGCGATATCTGCGCGCAACTACAGCTGCCGAGGATTTTCTTCAATGCTTGGCGTCGCCGGGGCAGGCCCGCCCAGgtgcgggcagtttggcgcgtgtgcagggtcggcaccttcccgcacctgcatccccaccccgtcccggtgccctttactcggctcacag
species | Chlamydomonas reinhardtii |
transcript | EDP00965 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCCGAGGATTTTCTTCAATGCTTGGCGTCGCCGGGGCAGGCCCGCCCAG GCGGCGAGACTACGCCGATGAACTCACTCGGGCTTTTCCTGCTGCCCAGCTEST: gi|6547806|gb|AV393590.1|AV393590
genomic: TGCCGAGGATTTTCTTCAATGCTTGGCGTCGCCGGGGCAGGCCCGCCCAGgtgcgggcag ... cggctcacagGCGGCGAGACTACGCCGATGAACTCACTCGGGCTTTTCCTGCTGCCCAGCT
EST: TGCCGAGGATTTTCTTCAATGCTTGGCGTCGCCGGGGCAGGCCCGCCCAG GCGGCGAGACTACGCCGATGAACTCACTCGGGCTTTTCCTGCTGCCCAGCTEST: gi|15702056|gb|BI726361.1|BI726361
genomic: TGCCGAGGATTTTCTTCAATGCTTGGCGTCGCCGGGGCAGGCCCGCCCAGgtgcgggcag ... cggctcacagGCGGCGAGACTACGCCGATGAACTCACTCGGGCTTTTCCTGCTGCCCAGCT
EST: TGCCGAGGATTTTCTTCAATGCTTGGCGTCGCCGGGGCAGGCCCGCCCAG GCGGCGAGACTACGCCGATGAACTCACTCGGGCTTTTCCTGCTGCCCAGCTEST: gi|15699177|gb|BI723482.1|BI723482
genomic: TGCCGAGGATTTTCTTCAATGCTTGGCGTCGCCGGGGCAGGCCCGCCCAGgtgcgggcag ... cggctcacagGCGGCGAGACTACGCCGATGAACTCACTCGGGCTTTTCCTGCTGCCCAGCT
EST: TGCCGAGGATTTTCTTCAATGCTTGGCGTCGCCGGGGCAGGCCCGCCCAG GCGGCGAGACTACGCCGATGAACTCACTCGGGCTTTTCCTGCTGCCCAGCTEST: gi|15699176|gb|BI723481.1|BI723481
genomic: TGCCGAGGATTTTCTTCAATGCTTGGCGTCGCCGGGGCAGGCCCGCCCAGgtgcgggcag ... cggctcacagGCGGCGAGACTACGCCGATGAACTCACTCGGGCTTTTCCTGCTGCCCAGCT
EST: TGCCGAGGATTTTCTTCAATGCTTGGCGTCGCCGGGGCAGGCCCGCCCAG GCGGCGAGACTACGCCGATGAACTCACTCGGGCTTTTCCTGCTGCCCAGCTEST: gi|15699178|gb|BI723483.1|BI723483
genomic: TGCCGAGGATTTTCTTCAATGCTTGGCGTCGCCGGGGCAGGCCCGCCCAGgtgcgggcag ... cggctcacagGCGGCGAGACTACGCCGATGAACTCACTCGGGCTTTTCCTGCTGCCCAGCT
EST: TGCCGAGGATTTTCTTCAATGCTTGGCGTCGCCGGGGCAGGCCCGCCCAG GCGGCGAGACTACGCCGATGAACTCACTCGGGCTTTTCCTGCTGCCCAGCTEST: gi|14232533|gb|BG851349.1|BG851349
genomic: TGCCGAGGATTTTCTTCAATGCTTGGCGTCGCCGGGGCAGGCCCGCCCAGgtgcgggcag ... cggctcacagGCGGCGAGACTACGCCGATGAACTCACTCGGGCTTTTCCTGCTGCCCAGCT
EST: TGCCGAGGATTTTCTTCAATGCTTGGCGTCGCCGGGGCAGGCCCGCCCAG GCGGCGAGACTACGCCGATGAACTCACTCGGGCTTTTCCTGCTGCCCAGCT
genomic: TGCCGAGGATTTTCTTCAATGCTTGGCGTCGCCGGGGCAGGCCCGCCCAGgtgcgggcag ... cggctcacagGCGGCGAGACTACGCCGATGAACTCACTCGGGCTTTTCCTGCTGCCCAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGGAGTAGAGCCAGCGACCCCAGGCGATATCTGCGCGCAACTACAGCTGCCGAGGATTTTCTTCAATGCTTGGCGTCGCCGGGGCAGGCCCGCCCAGgtgcgggcagtttggcgcgtgtgcagggtcggcaccttcccgcacctgcatccccaccccgtcccggtgccctttactcggctcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT