1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
gtgcgtagcatcatggggcgccgggacgggcggcggtggagcgaggccgggcagaatgcgtttgtgtgcagcgtagtggatactcacatgccatttgtgatgtcatacctttgcagGTCGGCGAACGCGGTGTGCAGCTGAGTGGCGGCCAGAAGCAGCGCATTGCCATTGCGCGCGCCATCCTCAAGAGCCCGAAG
species | Chlamydomonas reinhardtii |
transcript | EDP00406 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCAACGCGCACACCTTTATCAGCAACCTGCCCCAGGGCTATGAGACGCAG GTCGGCGAGCGCGGTGTGCAGCTGAGTGGCGGTCAGAAGCAGCGCATTGCCEST: gi|49466891|gb|BP094804.1|BP094804
genomic: CCAACGCGCACACCTTCATCAGCAACCTGCCCCAGGGCTACGAGACGCAGgtgcgtagca ... acctttgcagGTCGGCGAACGCGGTGTGCAGCTGAGTGGCGGCCAGAAGCAGCGCATTGCC
EST: CCAACGCGCACACCTTCATCAGCAACCTGCCCCAGGGCTACGAGACGCAG GTCGGCGAACGCGGTGTGCAGCTGAGTGGCGGCCAGAAGCAGCGCATTGCCEST: gi|49466152|gb|BP094065.1|BP094065
genomic: CCAACGCGCACACCTTCATCAGCAACCTGCCCCAGGGCTACGAGACGCAGgtgcgtagca ... acctttgcagGTCGGCGAACGCGGTGTGCAGCTGAGTGGCGGCCAGAAGCAGCGCATTGCC
EST: GCGCACACCTTTATCAGCAACCTGCCCCAGGGCTATGAGACGCAG GTCGGCGAGCGCGGTGTGCAGCTGAGTGGCGGTCAGAAGCAGCGCATTGCC
genomic: GCGCACACCTTCATCAGCAACCTGCCCCAGGGCTACGAGACGCAGgtgcgtagca ... acctttgcagGTCGGCGAACGCGGTGTGCAGCTGAGTGGCGGCCAGAAGCAGCGCATTGCC
ttgtgtgcagcgtagtggatactcacatgccatttgtgatgtcatacctttgcagGTCGGCGAACGCGGTGTGCAGCTGAGTGGCGGCCAGAAGCAGCGCATTGCCATTGCGCGCGCCATCCTCAAGAGCCCGAAG
tactcac putative branch site (score: 1)
taccttt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtagcatcatggggcgccgggacgggcggcggtggagcgaggccgggcagaatgcgtttgtgtgcagcgtagtggatactcacatgccatttgtgatgtcatacctttgcagGTCGGCGAACGCGGTGTGCAGCTGAGTGGCGGCCAGAAGCAGCGCATTGCCATTGCGCGCGCCATCCTCAAGAGCCCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC