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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgggcgagcagaggagggtggttcctcgtgtggcaacgctgcgccaaacgaagaggctagtgggcatgagcgggccttgcacagctgcgactgactgagtgctacgtatgacaccgcctgtagATTGGGCTGGTGAGCCAGGAGCCGCTGCTGTTCAACGGCACCGTCGCGGACAACATCCGCATCGGCAAGCCGGATGCCACGCAGGCGGAACTCCAGGCGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP00406
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15692560|gb|BI716865.1|BI716865
EST:     TCGACGGCATGGACGTGCGTGACTACAATCTCAGATACCTGCGCGCACAG                         ATTGGGCTGGTGAGCCAGGAGCCGCTGCTGTTCAACGGCACCGTCGCGGAC
genomic: TCGACGGCATGGACGTGCGTGACTACAATCTCAGATACCTGCGCGCACAGgtgcgggcga ... ccgcctgtagATTGGGCTGGTGAGCCAGGAGCCGCTGCTGTTCAACGGCACCGTCGCGGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcgggccttgcacagctgcgactgactgagtgctacgtatgacaccgcctgtagATTGGGCTGGTGAGCCAGGAGCCGCTGCTGTTCAACGGCACCGTCGCGGACAACATCCGCATCGGCAAGCCGGATGCCACGCAGGCGGAACTCCAGGCGG
                    gactgac  putative branch site (score: 2)