Sequence
atgc intronic sequence ATGC exonic sequence...cagtggtaatgcgtgctgcacgtacacgcagcgcctcagcattcccagccacagaacgcatcctcaatggtcttacgccatccccgtcttgaacttgcagCGCCGCGTTGCCATCGCCATCGAGGAGAAGCGGCGCCGGGGCCTCATCGCCGCATAAACAGCCCGGGGGGCTGGCAGAAACGGCAGGGTCAACGGGAGCT
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDO99667 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22072413|gb|BQ821751.1|BQ821751EST: GCGCCCACGAGCTGCACGCCTACAACAAGTGCGAGTACAAGGAGTTCAAG CGCCGCGTTGCCATCGCCATCGAGGAGAAGCGGCGCCGGGGCCTCATCGCC
genomic: GCGCCCACGAGCTGCACGCCTACAACAAGTGCGAGTACAAGGAGTTCAAGgtgagcccgc ... gaacttgcagCGCCGCGTTGCCATCGCCATCGAGGAGAAGCGGCGCCGGGGCCTCATCGCC
EST:
gi|6551743|gb|AV397527.1|AV397527EST: GCGCCCACGAGCTGCACGCCTACAACAAGTGCGAGTACAAGGAGTTCAAG CGCCGCGTTGCCATCGCCATCGAGGAGAAGCGGCGCCGGGGCCTCATCGCC
genomic: GCGCCCACGAGCTGCACGCCTACAACAAGTGCGAGTACAAGGAGTTCAAGgtgagcccgc ... gaacttgcagCGCCGCGTTGCCATCGCCATCGAGGAGAAGCGGCGCCGGGGCCTCATCGCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cagccacagaacgcatcctcaatggtcttacgccatccccgtcttgaacttgcagCGCCGCGTTGCCATCGCCATCGAGGAGAAGCGGCGCCGGGGCCTCATCGCCGCATAAACAGCCCGGGGGGCTGGCAGAAACGGCAGGGTCAACGGGAGCT
gtcttac putative branch site (score: 3)
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cagtggtaatgcgtgctgcacgtacacgcagcgcctcagcattcccagccacagaacgcatcctcaatggtcttacgccatccccgtcttgaacttgcagCGCCGCGTTGCCATCGCCATCGAGGAGAAGCGGCGCCGGGGCCTCATCGCCGCATAAACAGCCCGGGGGGCTGGCAGAAACGGCAGGGTCAACGGGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - -tgcgtgc
- - - - - - - - - - - -acacgca
- - - - - - - - - - - - - - - - - - - - - - - agccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcctca