Sequence
atgc intronic sequence ATGC exonic sequencegtgtgggctccggaggagacgattcctggagagaatgagccccgggtgcagcgccttgcctctgtcacctaaactgcggactgtggggcagagactactgttataattccatgcgccgagcgtgacgctgacagcctcggtctctggcacgcagGAGCAAATGGACGCTGCTGATGTCCCGTATCACTATCGGGACTACTGCGCACATATGTACATTGATTATAAGGAGTGCCGCCTCACTAGTGGCTTCTCGT
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDO99667 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22073118|gb|BQ822456.1|BQ822456EST: TCAGCAATATGGCGGATAGGTTCCCTCCCCCGCCTATGAAGGCGACACAG GAGCAAATGGACGCTGCTGATGTCCC
genomic: TCAGCAATATGGCGGATAGGTTCCCTCCCCCGCCTATGAAGGCGACACAGgtgtgggctc ... tggcacgcagGAGCAAATGGACGCTGCTGATGTCCC
EST:
gi|22072413|gb|BQ821751.1|BQ821751EST: TCAGCAATATGGCGGATAGGTTCCCTCCCCCGCCTATGAAGGCGACACAG GAGCAAATGGACGCTGCTGATGTCCCGTATCACTATCGGGACTACTGCGCA
genomic: TCAGCAATATGGCGGATAGGTTCCCTCCCCCGCCTATGAAGGCGACACAGgtgtgggctc ... tggcacgcagGAGCAAATGGACGCTGCTGATGTCCCGTATCACTATCGGGACTACTGCGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttataattccatgcgccgagcgtgacgctgacagcctcggtctctggcacgcagGAGCAAATGGACGCTGCTGATGTCCCGTATCACTATCGGGACTACTGCGCACATATGTACATTGATTATAAGGAGTGCCGCCTCACTAGTGGCTTCTCGT
cgctgac putative branch site (score: 3)
tctct putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtgggctccggaggagacgattcctggagagaatgagccccgggtgcagcgccttgcctctgtcacctaaactgcggactgtggggcagagactactgttataattccatgcgccgagcgtgacgctgacagcctcggtctctggcacgcagGAGCAAATGGACGCTGCTGATGTCCCGTATCACTATCGGGACTACTGCGCACATATGTACATTGATTATAAGGAGTGCCGCCTCACTAGTGGCTTCTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG