Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGGCGACCAAACTTGAGCGCCAGGGTCCCCAGTCGCGAGCACAGCAGCTCAGCAATATGGCGGATAGGTTCCCTCCCCCGCCTATGAAGGCGACACAGgtgtgggctccggaggagacgattcctggagagaatgagccccgggtgcagcgccttgcctctgtcacctaaactgcggactgtggggcagagactactgttataattccatgcgccgagcgtgacgctgacagcctcggtctctggcacgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO99667
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22073118|gb|BQ822456.1|BQ822456
EST:     TCAGCAATATGGCGGATAGGTTCCCTCCCCCGCCTATGAAGGCGACACAG                         GAGCAAATGGACGCTGCTGATGTCCC
genomic: TCAGCAATATGGCGGATAGGTTCCCTCCCCCGCCTATGAAGGCGACACAGgtgtgggctc ... tggcacgcagGAGCAAATGGACGCTGCTGATGTCCC
EST: gi|22072413|gb|BQ821751.1|BQ821751
EST:     TCAGCAATATGGCGGATAGGTTCCCTCCCCCGCCTATGAAGGCGACACAG                         GAGCAAATGGACGCTGCTGATGTCCCGTATCACTATCGGGACTACTGCGCA
genomic: TCAGCAATATGGCGGATAGGTTCCCTCCCCCGCCTATGAAGGCGACACAGgtgtgggctc ... tggcacgcagGAGCAAATGGACGCTGCTGATGTCCCGTATCACTATCGGGACTACTGCGCA