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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtactagcagatacggcgccagcgggcgacccacgtactaatcgcatggctctggtacaatctaaccgctcacgggcatgccgagtagttctggtattaaccacgcatttttccaacctctcaccgccgcagCCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGACCGGCACCACCGATATCAAGAGCTCTTTCCTGTGGGACTCCACCCGTCC

Basic information

species Chlamydomonas reinhardtii
transcript EDO99600
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10778490|gb|AV635170.1|AV635170
EST:     GCTGCAAGCA-GGCCTGCAGAAGATCGAGCTCGAGGCCA                         CCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGA
genomic: GCTGCAAGCAGGGCCTGCAGAAGATCGAGCTCGAGGCCAgtgagtacta ... accgccgcagCCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGA
EST: gi|10770215|gb|AV621040.1|AV621040
EST:     CAAGTTCGGTTGCTGCAAGCAGGGCCTGCAGAAGATCGAGCTCGAGGCCA                         CCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGA
genomic: CAAGTTCGGTTGCTGCAAGCAGGGCCTGCAGAAGATCGAGCTCGAGGCCAgtgagtacta ... accgccgcagCCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGA
EST: gi|10780230|gb|AV636910.1|AV636910
EST:     CAAGTTCGGTTGCTGCAAGCAGGGCCTGCAGAAGATCGAGCTCGAGGCCA                         CCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGA
genomic: CAAGTTCGGTTGCTGCAAGCAGGGCCTGCAGAAGATCGAGCTCGAGGCCAgtgagtacta ... accgccgcagCCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGA
EST: gi|23360900|gb|BU648720.1|BU648720
EST:     CAAGTTCGGTTGCTGCAAGCAGGGCCTGCAGAAGATCGAGCTCGAGGCCA                         CCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGA
genomic: CAAGTTCGGTTGCTGCAAGCAGGGCCTGCAGAAGATCGAGCTCGAGGCCAgtgagtacta ... accgccgcagCCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGA
EST: gi|10775885|gb|AV632565.1|AV632565
EST:     CAAGTTCGGTTGCTGCAAGCAGGGCCTGCAGAAGATCGAGCTCGAGGCCA                         CCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGA
genomic: CAAGTTCGGTTGCTGCAAGCAGGGCCTGCAGAAGATCGAGCTCGAGGCCAgtgagtacta ... accgccgcagCCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGA
EST: gi|10775668|gb|AV632348.1|AV632348
EST:     GTTCGGTTGCTGCAAGCAGGGCCTGCAGAAGATCGAGCTCGAGGCCA                         CCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGA
genomic: GTTCGGTTGCTGCAAGCAGGGCCTGCAGAAGATCGAGCTCGAGGCCAgtgagtacta ... accgccgcagCCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGA
EST: gi|22061086|gb|BQ814068.1|BQ814068
EST:     GGGCCTGCAGAAGATCGAGCTCGAGGCCA                         CCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGA
genomic: GGGCCTGCAGAAGATCGAGCTCGAGGCCAgtgagtacta ... accgccgcagCCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGA
EST: gi|6541924|gb|AV387708.1|AV387708
EST:     GTTGCTGCAAGCAGGGCCTGCAGAAGATCGAGCTCGAGGCCA                         CCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGA
genomic: GTTGCTGCAAGCAGGGCCTGCAGAAGATCGAGCTCGAGGCCAgtgagtacta ... accgccgcagCCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGA
EST: gi|10793547|gb|AV630913.1|AV630913
EST:     AGAAGATCGAGCTCGAGGCCA                         CCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGA
genomic: AGAAGATCGAGCTCGAGGCCAgtgagtacta ... accgccgcagCCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGA
EST: gi|10781542|gb|AV638222.1|AV638222
EST:     CAAGTTCGGTTGCTGCAAGCAGGGCCTGCAGAAGATCGAGCTCGAGGCCA                         CCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGA
genomic: CAAGTTCGGTTGCTGCAAGCAGGGCCTGCAGAAGATCGAGCTCGAGGCCAgtgagtacta ... accgccgcagCCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgccgagtagttctggtattaaccacgcatttttccaacctctcaccgccgcagCCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGACCGGCACCACCGATATCAAGAGCTCTTTCCTGTGGGACTCCACCCGTCC
                                       cctctcacc  CT-rich tract
                 tattaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtactagcagatacggcgccagcgggcgacccacgtactaatcgcatggctctggtacaatctaaccgctcacgggcatgccgagtagttctggtattaaccacgcatttttccaacctctcaccgccgcagCCTCCACCGTGCCTGGCCAGTGCAAGGGCTCGATCACCCCCTTCACCCTGACCGGCACCACCGATATCAAGAGCTCTTTCCTGTGGGACTCCACCCGTCC

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