1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACCGACCTGAAGACCATCGCCGTTGAGGTGCTGGACAATGGCCGCGCCATCCTGCGCATTTCTAAGGGCCTTGACTACTCCGCGGCCACGCTTCCAGCTGgtgagctccagatcagttatctgcgttgcggtccaactcatccctagatatgtaacctagccaccccgtgttttggctgtcattgttcgtgtgaaatacacaacatcttgtgttacacgctgtgcactgcctctgaccctatgcatatatgtactgcttccttgcag
species | Chlamydomonas reinhardtii |
transcript | EDO99600 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCTGCGCATTTCTAAGGGCCTTGACTACTCCGCGGCCACGCTTCCAGCTG GCGGCCTGTCTGTGTGCGTGAACCGCCTGGCTGGCCAGTGCACGATCAGCGEST: gi|161801715|gb|FC092657.1|FC092657
genomic: CCTGCGCATTTCTAAGGGCCTTGACTACTCCGCGGCCACGCTTCCAGCTGgtgagctcca ... ttccttgcagGCGGCCTGTCTGTGTGCGTGAACCGCCTGGCTGGCCAGTGCACGATCAGCG
EST: CCTGCGCATTTCTAAGGGCCTTGACTACTCCGCGGCCACGCTCCCGGCTG GCGGCCTGTCCGTGTGCGTGAACCGCCTGGCTGGCCAGTGCACGATCAGCGEST: gi|34987901|gb|CF561818.1|CF561818
genomic: CCTGCGCATTTCTAAGGGCCTTGACTACTCCGCGGCCACGCTTCCAGCTGgtgagctcca ... ttccttgcagGCGGCCTGTCTGTGTGCGTGAACCGCCTGGCTGGCCAGTGCACGATCAGCG
EST: CCTGCGCATTTCTAAGGGCCTTGACTACTCCGCGGCCACGCTTCCAGCTG GCGGCCTGTCTGTGTGCGTGAACCGCCTGGCTGGCCAGTGCACGATCAGCGEST: gi|34990252|gb|CF564169.1|CF564169
genomic: CCTGCGCATTTCTAAGGGCCTTGACTACTCCGCGGCCACGCTTCCAGCTGgtgagctcca ... ttccttgcagGCGGCCTGTCTGTGTGCGTGAACCGCCTGGCTGGCCAGTGCACGATCAGCG
EST: CCTGCGCATTTCTAAGGGCCTTGACTACTCCGCGGCCACGCTTCCAGCTG GCGGCCTGTCTGTGAGCGTGAACCGCCTGGCTGGCCAGTGCACGATCAGCGEST: gi|6542464|gb|AV388248.1|AV388248
genomic: CCTGCGCATTTCTAAGGGCCTTGACTACTCCGCGGCCACGCTTCCAGCTGgtgagctcca ... ttccttgcagGCGGCCTGTCTGTGTGCGTGAACCGCCTGGCTGGCCAGTGCACGATCAGCG
EST: CCTGCGCATTTCTAAGGGCCTTGACTACTCCGCGGCCACGCTTCCAGCTG GCGGCCTGTCTGTGTGCGTGAACCGCCTGGCTGGCCAGTGCACGATCAGCG
genomic: CCTGCGCATTTCTAAGGGCCTTGACTACTCCGCGGCCACGCTTCCAGCTGgtgagctcca ... ttccttgcagGCGGCCTGTCTGTGTGCGTGAACCGCCTGGCTGGCCAGTGCACGATCAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCGACCTGAAGACCATCGCCGTTGAGGTGCTGGACAATGGCCGCGCCATCCTGCGCATTTCTAAGGGCCTTGACTACTCCGCGGCCACGCTTCCAGCTGgtgagctccagatcagttatctgcgttgcggtccaactcatccctagatatgtaacctagccaccccgtgttttggctgtcattgttcgtgtgaaatacacaacatcttgtgttacacgctgtgcactgcctctgaccctatgcatatatgtactgcttccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG