Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatattacatgactactatttcacacttgggcagttgcgtggggtttagatggcccagttcgcacaagtgacccggctggcactgacacttagctcccacgcgtcctcttccctcttaccccagCCCCCGAGTGCAAGGGTACCTCGAACCGTGCTCTGATCAACAAGGACGTGACCGACCTGAAGACCATCGCCGTTGAGGTGCTGGACAATGGCCGCGCCAT

Basic information

species Chlamydomonas reinhardtii
transcript EDO99600
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161801715|gb|FC092657.1|FC092657
EST:     GCAGCCCGCGTGCTGCAAGCCGAACCTCTCGAAGCTCGAGTTCGATGTTG                         CCCCCGAGTGCAAGGGCACCTCGAACCGTGCTCTGATCAACAAGGATGTGA
genomic: GCAGCCCGCGTGCTGCAAGCCGAACCTCTCGAAGCTCGAGTTCGATGTTGgtgagatatt ... cttaccccagCCCCCGAGTGCAAGGGTACCTCGAACCGTGCTCTGATCAACAAGGACGTGA
EST: gi|34987901|gb|CF561818.1|CF561818
EST:     CTCGAGTTCGATGTTG                         CCCCCGAGTGCAAGGGTACCTCGAACCGTGCTCTGATCAACAAGGACGTGA
genomic: CTCGAGTTCGATGTTGgtgagatatt ... cttaccccagCCCCCGAGTGCAAGGGTACCTCGAACCGTGCTCTGATCAACAAGGACGTGA
EST: gi|34990252|gb|CF564169.1|CF564169
EST:     CGAGTTCCATGTTG                         CCCCCGAGTGCAAGGGTACCTCGAACCGTGCTCTGATCAACAAGGACGTGA
genomic: CGAGTTCGATGTTGgtgagatatt ... cttaccccagCCCCCGAGTGCAAGGGTACCTCGAACCGTGCTCTGATCAACAAGGACGTGA
EST: gi|10793192|gb|AV630558.1|AV630558
EST:     GCAGCCCGCGTGCTGCAAGCCGAACCTCTCGAAGCTCGAGTTCGATGTTG                         CCCCCGAGTGCAAGGGTACCTCGAACCGTGCTCTGATCAACAAGGACGTGA
genomic: GCAGCCCGCGTGCTGCAAGCCGAACCTCTCGAAGCTCGAGTTCGATGTTGgtgagatatt ... cttaccccagCCCCCGAGTGCAAGGGTACCTCGAACCGTGCTCTGATCAACAAGGACGTGA
EST: gi|6542464|gb|AV388248.1|AV388248
EST:     GCAGCCCGCGTGCTGCAAGCCGAACCTCTCGAAGCTCGAGTTCGATGTTG                         CCCCCGAGTGCAAGGGTACCTCGAACCGTGCTCTGATCAACAAGGACGTGA
genomic: GCAGCCCGCGTGCTGCAAGCCGAACCTCTCGAAGCTCGAGTTCGATGTTGgtgagatatt ... cttaccccagCCCCCGAGTGCAAGGGTACCTCGAACCGTGCTCTGATCAACAAGGACGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacccggctggcactgacacttagctcccacgcgtcctcttccctcttaccccagCCCCCGAGTGCAAGGGTACCTCGAACCGTGCTCTGATCAACAAGGACGTGACCGACCTGAAGACCATCGCCGTTGAGGTGCTGGACAATGGCCGCGCCAT
                        ctcccacgcgtcctct  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagatattacatgactactatttcacacttgggcagttgcgtggggtttagatggcccagttcgcacaagtgacccggctggcactgacacttagctcccacgcgtcctcttccctcttaccccagCCCCCGAGTGCAAGGGTACCTCGAACCGTGCTCTGATCAACAAGGACGTGACCGACCTGAAGACCATCGCCGTTGAGGTGCTGGACAATGGCCGCGCCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA