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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtgcaacctcagcacggcgctgggctacgttacttgtgggtgtaaggcaatagacgggcccggtcgtgtctacaagtgcgtcggaaaggacacctgcgcgtgctcggcacaaggacagggccacggtgcatgcaaccggcggcgcgtgcaaatgtttaaccgtgcttgcggcgctacacgcactgcagACGGAATCCATGTTTTTCATCGCGGACACGGACAAGGAGAAGGAGGACTGGATCAACGCCATTGGCCGCGCCATTGTCAAGCACTCACGCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO99100
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161793755|gb|FC079096.1|FC079096
EST:     GCGCAGAGGACACAATCAACAAGGCCAACGCATTTGAGATCAGCACACAG                         ACGGAATCCATGTTTTTCATCGCGGACACGGACAAAGAGAAGGAGGACTGG
genomic: GCGCAGAGGACACAATCAACAAGGCCAACGCATTTGAGATCAGCACACAGgcaagtgcaa ... cgcactgcagACGGAATCCATGTTTTTCATCGCGGACACGGACAAGGAGAAGGAGGACTGG
EST: gi|22076884|gb|BQ825660.1|BQ825660
EST:     GCGCAGAGGACACAATCAACAAGGCCAACGCATTTGAGATCAGCACACAG                         ACGGAATCCATGTTTTTCATCGCGGACACGGACAAGGAGAAGGAGGACTGG
genomic: GCGCAGAGGACACAATCAACAAGGCCAACGCATTTGAGATCAGCACACAGgcaagtgcaa ... cgcactgcagACGGAATCCATGTTTTTCATCGCGGACACGGACAAGGAGAAGGAGGACTGG
EST: gi|161808421|gb|FC096713.1|FC096713
EST:     GCGCAGAGGACACAATCAACAAGGCCAACGCATTTGAGATCAGCACACAG                         ACGGAATCCATGTTTTTCATCGCGGACACGGACAAAGAGAAGGAGGACTGG
genomic: GCGCAGAGGACACAATCAACAAGGCCAACGCATTTGAGATCAGCACACAGgcaagtgcaa ... cgcactgcagACGGAATCCATGTTTTTCATCGCGGACACGGACAAGGAGAAGGAGGACTGG
EST: gi|15373582|gb|BI533008.1|BI533008
EST:     GCGCAGAGGACACAATCAACAAGGCCAACGCATTTGAGATCAGCACACAG                         ACGGAATCCATGTTTTTCATCGCGGACACGGACAAGGAGAAGGAGGACTGG
genomic: GCGCAGAGGACACAATCAACAAGGCCAACGCATTTGAGATCAGCACACAGgcaagtgcaa ... cgcactgcagACGGAATCCATGTTTTTCATCGCGGACACGGACAAGGAGAAGGAGGACTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaccggcggcgcgtgcaaatgtttaaccgtgcttgcggcgctacacgcactgcagACGGAATCCATGTTTTTCATCGCGGACACGGACAAGGAGAAGGAGGACTGGATCAACGCCATTGGCCGCGCCATTGTCAAGCACTCACGCAG
                    gtttaac  putative branch site (score: 3)
                aaatgtttaa  TA-rich tract