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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgcaaaatgcagatttgtagcactcatattgactcaacagaatgctagggctcacatcgcggaacctgcccgcacctctgccgaatttctgtgtcctttcatgttcagGCGAAATCATTAAGACATGGCGTCGCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO99100
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161793755|gb|FC079096.1|FC079096
EST:     GGTGGAGTTCTGGCACTCACCAGAGCGCTGCGGATGGCTACAAAAGCAAG                         GCGAAATCATTAAGACATGGCGTCGCAG
genomic: GGTGGAGTTCTGGCACTCACCAGAGCGCTGCGGATGGTTACAAAAGCAAGgtatgtgcaa ... tcatgttcagGCGAAATCATTAAGACATGGCGTCGCAG
EST: gi|22076884|gb|BQ825660.1|BQ825660
EST:     GGTGGAGTTCTGGCACTCACCAGAGCGCTGCGGATGGTTACAAAAGCAAG                         GCGAAATCATTAAGACATGGCGTCGCAG
genomic: GGTGGAGTTCTGGCACTCACCAGAGCGCTGCGGATGGTTACAAAAGCAAGgtatgtgcaa ... tcatgttcagGCGAAATCATTAAGACATGGCGTCGCAG
EST: gi|161808421|gb|FC096713.1|FC096713
EST:     GGTGGAGTTCTGGCACTCACCAGAGCGCTGCGGATGGCTACAAAAGCAAG                         GCGAAATCATTAAGACATGGCGTCGCAG
genomic: GGTGGAGTTCTGGCACTCACCAGAGCGCTGCGGATGGTTACAAAAGCAAGgtatgtgcaa ... tcatgttcagGCGAAATCATTAAGACATGGCGTCGCAG
EST: gi|15373582|gb|BI533008.1|BI533008
EST:     GGTGGAGTTCTGGCACTCACCAGAGCGCTGCGGATGGTTACAAAAGCAAG                         GCGAAATCATTAAGACATGGCGTCGCAG
genomic: GGTGGAGTTCTGGCACTCACCAGAGCGCTGCGGATGGTTACAAAAGCAAGgtatgtgcaa ... tcatgttcagGCGAAATCATTAAGACATGGCGTCGCAG
EST: gi|22063917|gb|BQ815502.1|BQ815502
EST:     GGTGGAGTTCTGGCACTCACCAGAGCGCTGCGGATGGTTACAAAAGCAAG                         GCGAAATCATTAAGACATGGCGTCGCAG
genomic: GGTGGAGTTCTGGCACTCACCAGAGCGCTGCGGATGGTTACAAAAGCAAGgtatgtgcaa ... tcatgttcagGCGAAATCATTAAGACATGGCGTCGCAG
EST: gi|16431663|gb|BI996889.1|BI996889
EST:     GGTGGAGTTCTGGCACTCACCAGAGCGCTGCGGATGGTTACAAAAGCAAG                         GCGAAATCATTAAGACATGGCGTCGCAG
genomic: GGTGGAGTTCTGGCACTCACCAGAGCGCTGCGGATGGTTACAAAAGCAAGgtatgtgcaa ... tcatgttcagGCGAAATCATTAAGACATGGCGTCGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatcgcggaacctgcccgcacctctgccgaatttctgtgtcctttcatgttcagGCGAAATCATTAAGACATGGCGTCGCAG
 ggctcac  putative branch site (score: 3)
                                tttctgtgtcctttc  putative PPT
                              aatttct  TA-rich tract