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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAAATCATTAAGACATGGCGTCGCAGgcaagttgcgctgctgcattccgtcgcgtttggaggatgttgctgatttcgggccccacgcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO99100
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161793755|gb|FC079096.1|FC079096
EST:     GCGAAATCATTAAGACATGGCGTCGCAG                         GTGGTTTGTGATGAAGCAGGGCAAGATTTTCTGGTTCAAGAGCGATGTTGT
genomic: GCGAAATCATTAAGACATGGCGTCGCAGgcaagttgcg ... ccacgcgcagGTGGTTTGTGATGAAGCAGGGCAAGATTTTCTGGTTTAAGAGCGATGTTGT
EST: gi|22076884|gb|BQ825660.1|BQ825660
EST:     GCGAAATCATTAAGACATGGCGTCGCAG                         GTGGTTTGTGATGAAGCAGGGCAAGATTTTCTGGTTTAAGAGCGATGTTGT
genomic: GCGAAATCATTAAGACATGGCGTCGCAGgcaagttgcg ... ccacgcgcagGTGGTTTGTGATGAAGCAGGGCAAGATTTTCTGGTTTAAGAGCGATGTTGT
EST: gi|161808421|gb|FC096713.1|FC096713
EST:     GCGAAATCATTAAGACATGGCGTCGCAG                         GTGGTTTGTGATGAAGCAGGGCAAGATTTTCTGGTTCAAGAGCGATGTTGT
genomic: GCGAAATCATTAAGACATGGCGTCGCAGgcaagttgcg ... ccacgcgcagGTGGTTTGTGATGAAGCAGGGCAAGATTTTCTGGTTTAAGAGCGATGTTGT
EST: gi|15373582|gb|BI533008.1|BI533008
EST:     GCGAAATCATTAAGACATGGCGTCGCAG                         GTGGTTTGTGATGAAGCAGGGCAAGATTTTCTGGTTTAAGAGCGATGTTGT
genomic: GCGAAATCATTAAGACATGGCGTCGCAGgcaagttgcg ... ccacgcgcagGTGGTTTGTGATGAAGCAGGGCAAGATTTTCTGGTTTAAGAGCGATGTTGT
EST: gi|22063917|gb|BQ815502.1|BQ815502
EST:     GCGAAATCATTAAGACATGGCGTCGCAG                         GTGGTTTGTGATGAAGCAGGGCAAGATTTTCTGGTTTAAGAGCGATGTTTG
genomic: GCGAAATCATTAAGACATGGCGTCGCAGgcaagttgcg ... ccacgcgcagGTGGTTTGTGATGAAGCAGGGCAAGATTTTCTGGTTTAAGAGCGATGTT-G
EST: gi|16431663|gb|BI996889.1|BI996889
EST:     GCGAAATCATTAAGACATGGCGTCGCAG                         GTGGTTTGTGATGAAGCAGGGCAAGATTTTCTGGTTTAAGAGCGATGTTGT
genomic: GCGAAATCATTAAGACATGGCGTCGCAGgcaagttgcg ... ccacgcgcagGTGGTTTGTGATGAAGCAGGGCAAGATTTTCTGGTTTAAGAGCGATGTTGT