1 5' 3' | 2 5' 3' | 3 5' 3' |
CGGGAGCATCCCCTAACGGCCTTTCGCCCTCGCGAGCGCCCGGACTTCCAGGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGGgtgagatggtgtctgttacgcacccagactgcggcaccttacgcggcacggcgaagtgccccgtgtgagccccaagtgccccagccctcctgcgtcctgctccgccaaccgttctttccttgctgccagcatcaccggccgatgccccaaaccaaaccgccgctgacatgcttcgacgctctgcgtcccacag
species | Chlamydomonas reinhardtii |
transcript | EDO98611 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGG ATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACCEST: gi|8287515|gb|BE025074.1|BE025074
genomic: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGGgtgagatggt ... cgtcccacagATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
EST: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGG ATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACCEST: gi|14232547|gb|BG851363.1|BG851363
genomic: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGGgtgagatggt ... cgtcccacagATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
EST: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGAGGAAGTCTCGG ATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACCEST: gi|23366672|gb|BU654491.1|BU654491
genomic: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGGgtgagatggt ... cgtcccacagATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
EST: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGG ATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACCEST: gi|14227325|gb|BG846141.1|BG846141
genomic: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGGgtgagatggt ... cgtcccacagATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
EST: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGG ATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACCEST: gi|15702079|gb|BI726384.1|BI726384
genomic: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGGgtgagatggt ... cgtcccacagATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
EST: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGG ATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACCEST: gi|23365901|gb|BU653721.1|BU653721
genomic: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGGgtgagatggt ... cgtcccacagATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
EST: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGG ATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
genomic: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGGgtgagatggt ... cgtcccacagATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGGAGCATCCCCTAACGGCCTTTCGCCCTCGCGAGCGCCCGGACTTCCAGGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGGgtgagatggtgtctgttacgcacccagactgcggcaccttacgcggcacggcgaagtgccccgtgtgagccccaagtgccccagccctcctgcgtcctgctccgccaaccgttctttccttgctgccagcatcaccggccgatgccccaaaccaaaccgccgctgacatgcttcgacgctctgcgtcccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG