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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatggtgtctgttacgcacccagactgcggcaccttacgcggcacggcgaagtgccccgtgtgagccccaagtgccccagccctcctgcgtcctgctccgccaaccgttctttccttgctgccagcatcaccggccgatgccccaaaccaaaccgccgctgacatgcttcgacgctctgcgtcccacagATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACCAACAAGCCCTCGCCGCGGAATGAGAAGGCCGTTCTGAACACCATGGGCA

Basic information

species Chlamydomonas reinhardtii
transcript EDO98611
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15373474|gb|BI532900.1|BI532900
EST:     GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGG                         ATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
genomic: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGGgtgagatggt ... cgtcccacagATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
EST: gi|8287515|gb|BE025074.1|BE025074
EST:     GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGG                         ATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
genomic: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGGgtgagatggt ... cgtcccacagATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
EST: gi|14232547|gb|BG851363.1|BG851363
EST:     GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGAGGAAGTCTCGG                         ATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
genomic: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGGgtgagatggt ... cgtcccacagATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
EST: gi|23366672|gb|BU654491.1|BU654491
EST:     GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGG                         ATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
genomic: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGGgtgagatggt ... cgtcccacagATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
EST: gi|14227325|gb|BG846141.1|BG846141
EST:     GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGG                         ATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
genomic: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGGgtgagatggt ... cgtcccacagATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
EST: gi|15702079|gb|BI726384.1|BI726384
EST:     GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGG                         ATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
genomic: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGGgtgagatggt ... cgtcccacagATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
EST: gi|23365901|gb|BU653721.1|BU653721
EST:     GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGG                         ATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC
genomic: GGATGGGCAAAATGGACCCAACCCAGATGGACAGGTGGTGGAAGTCTCGGgtgagatggt ... cgtcccacagATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgatgccccaaaccaaaccgccgctgacatgcttcgacgctctgcgtcccacagATCCAAAAGGAGGAGCTGCAGTATGGCGTGAGCAACAGCAATGACGGCACCAACAAGCCCTCGCCGCGGAATGAGAAGGCCGTTCTGAACACCATGGGCA
                      cgctgac  putative branch site (score: 3)