1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgctggacccgcttgggcacacgtgccgcctacaacctgcccgctcctcactgtctcacgctccctccacgcctgctcctcgcctgctcccgccctgcagATCGAGGCTTCCATGACCAAGACCGGCACGCAGACCTGCTACAACCCCAAGGGTTCCTGGTTCAGCGCCAAGCCGCGCAACTGGCGCAAGTACGAGTCTT
species | Chlamydomonas reinhardtii |
transcript | EDO98585 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAACGACTACAACCCCACAAACACGCAGTTCAAGCAGCCCACCTACCAG ATCGAGGCTTCCATGACCAAGACCGGCACGCAGACCTGCTACAACCCCAAGEST: gi|8828338|gb|BE212068.1|BE212068
genomic: TCAACGACTACAACCCCACAAACACGCAGTTCAAGCAGCCCACCTACCAGgtggggaggg ... cgccctgcagATCGAGGCTTCCATGACCAAGACCGGCACGCAGACCTGCTACAACCCCAAG
EST: TCAACGACTACAACCCCACAAACACGCAGTTCAAGCAGCCCACCTACCAG ATCGAGGCTTCCATGACCAAGACCGGCACGCAGACCTGCTACAACCCCAAGEST: gi|49466505|gb|BP094418.1|BP094418
genomic: TCAACGACTACAACCCCACAAACACGCAGTTCAAGCAGCCCACCTACCAGgtggggaggg ... cgccctgcagATCGAGGCTTCCATGACCAAGACCGGCACGCAGACCTGCTACAACCCCAAG
EST: TCAACGACTACAACCCCACAAACACGCAGTTCAAGCAGCCCACCTACCAG ATCGAGGCTTCCATGACCAAGACCGGCACGCAGACCTGCTACAACCCCAAGEST: gi|10774774|gb|AV625597.1|AV625597
genomic: TCAACGACTACAACCCCACAAACACGCAGTTCAAGCAGCCCACCTACCAGgtggggaggg ... cgccctgcagATCGAGGCTTCCATGACCAAGACCGGCACGCAGACCTGCTACAACCCCAAG
EST: TCAACGACTACAACCCCACAAACACGCAGTTCAAGCAGCCCACCTACCAG ATCGAGGCTTCCATGACCAAGACCGGCACGCAGACCTEST: gi|22051020|gb|BQ809458.1|BQ809458
genomic: TCAACGACTACAACCCCACAAACACGCAGTTCAAGCAGCCCACCTACCAGgtggggaggg ... cgccctgcagATCGAGGCTTCCATGACCAAGACCGGCACGCAGACCT
EST: TCAACGACTACAACCCCACAAACACGCAGTTCAAGCAGCCCACCTACCAG ATCGAGGCTTCCATGACCAAGACCGGCACGCAGACCTGCTACAACCCCAAG
genomic: TCAACGACTACAACCCCACAAACACGCAGTTCAAGCAGCCCACCTACCAGgtggggaggg ... cgccctgcagATCGAGGCTTCCATGACCAAGACCGGCACGCAGACCTGCTACAACCCCAAG
cctcactgtctcacgctccctccacgcctgctcctcgcctgctcccgccctgcagATCGAGGCTTCCATGACCAAGACCGGCACGCAGACCTGCTACAACCCCAAGGGTTCCTGGTTCAGCGCCAAGCCGCGCAACTGGCGCAAGTACGAGTCTT
ctcctcgcctgctccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctggacccgcttgggcacacgtgccgcctacaacctgcccgctcctcactgtctcacgctccctccacgcctgctcctcgcctgctcccgccctgcagATCGAGGCTTCCATGACCAAGACCGGCACGCAGACCTGCTACAACCCCAAGGGTTCCTGGTTCAGCGCCAAGCCGCGCAACTGGCGCAAGTACGAGTCTT
- - - - - - - - gcacacg
- - - - - - - - - - - - - - - -acaacct
- - - - - - - - - - - - - - - - - - - - - - -cctcact
- - - - - - - - - - - - - - - - - - - - - - - - - - gtctcac