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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cactggcctccctccaccagggccttgcgacgcaatgttggacaatgttgaagtgggcgtgtcttggtgtcaagcttcgcgccacttcgcaaccccgcagGCCGGCGGCGCTGGATCGTGTACAAGGACAAGTTCGACTACAACCCCACCACCATCCCTCCCGAGTGGCACGGCTGGCTCAACTACATCAACGACTACAA

Basic information

species Chlamydomonas reinhardtii
transcript EDO98585
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6545049|gb|AV390833.1|AV390833
EST:     CACCGACTACAACGGCAACCGGTACTACGAGAACGAGGAGGCGGCCTACG                         GCCGGCGGCGCTGGATCGTGTACAAGGACAAGTTCGACTACAACCCCACCA
genomic: CACCGACTACAACGGCAACCGGTACTACGAGAACGAGGAGGCGGCCTACGgtgcgtggcg ... aaccccgcagGCCGGCGGCGCTGGATCGTGTACAAGGACAAGTTCGACTACAACCCCACCA
EST: gi|23358829|gb|BU646649.1|BU646649
EST:     CACCGACTACAACGGCAACCGGTACTACGAGAACGAGGAGGCGGCCTACG                         GCCGGCGGCGCTGGATCGTGTACAAGGACAAGTTCGACTACAACCCCACCA
genomic: CACCGACTACAACGGCAACCGGTACTACGAGAACGAGGAGGCGGCCTACGgtgcgtggcg ... aaccccgcagGCCGGCGGCGCTGGATCGTGTACAAGGACAAGTTCGACTACAACCCCACCA
EST: gi|8828338|gb|BE212068.1|BE212068
EST:     CACAGACTACAACGGCAACCGGTACTACGAGAACGAGGAGGCGGCCTACG                         GCCGGCGGCGCTGGATCGTGTACAAGGACAAGTTCGACTACAACCCCACCA
genomic: CACCGACTACAACGGCAACCGGTACTACGAGAACGAGGAGGCGGCCTACGgtgcgtggcg ... aaccccgcagGCCGGCGGCGCTGGATCGTGTACAAGGACAAGTTCGACTACAACCCCACCA
EST: gi|49466505|gb|BP094418.1|BP094418
EST:     CACCGACTACAACGGCAACCGGTACTACGAGAACGAGGAGGCGGCCTACG                         GCCGGCGGCGCTGGATCGTGTACAAGGACAAGTTCGACTACAACCCCACCA
genomic: CACCGACTACAACGGCAACCGGTACTACGAGAACGAGGAGGCGGCCTACGgtgcgtggcg ... aaccccgcagGCCGGCGGCGCTGGATCGTGTACAAGGACAAGTTCGACTACAACCCCACCA
EST: gi|10774774|gb|AV625597.1|AV625597
EST:     CACCGACTACAACGGCAACCGGTACTACGAGAACGAGGAGGCGGCCTACG                         GCCGGCGGCGCTGGATCGTGTACAAGGACAAGTTCGACTACAACCCCACCA
genomic: CACCGACTACAACGGCAACCGGTACTACGAGAACGAGGAGGCGGCCTACGgtgcgtggcg ... aaccccgcagGCCGGCGGCGCTGGATCGTGTACAAGGACAAGTTCGACTACAACCCCACCA
EST: gi|22051020|gb|BQ809458.1|BQ809458
EST:     CACAGACTACAACGGCAACCGGTACTACGAGAACGAGGAGGCGGCCTACG                         GCCGGCGGCGCTGGATCGTGTACAAGGACAAGTTCGACTACAACCCCACCA
genomic: CACCGACTACAACGGCAACCGGTACTACGAGAACGAGGAGGCGGCCTACGgtgcgtggcg ... aaccccgcagGCCGGCGGCGCTGGATCGTGTACAAGGACAAGTTCGACTACAACCCCACCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cactggcctccctccaccagggccttgcgacgcaatgttggacaatgttgaagtgggcgtgtcttggtgtcaagcttcgcgccacttcgcaaccccgcagGCCGGCGGCGCTGGATCGTGTACAAGGACAAGTTCGACTACAACCCCACCACCATCCCTCCCGAGTGGCACGGCTGGCTCAACTACATCAACGACTACAA

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