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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atctgggggggctgctgcacccccactccccagcactgcaacccttcctcaacccccccccccccgcccccgtcccgtctcattcccgacacatacacagGCACAACGTGCTGGTCCGCGCCACGGGTGCCGGGCGGCTGGTGGGCACCGACTACAACGGCAACCGGTACTACGAGAACGAGGAGGCGGCCTACG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98585
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6545049|gb|AV390833.1|AV390833
EST:     TTCTTCGCATCGTGGGAGTTCGGCAAGATGCTGGTAGATGGCAACCTTGC                         GCACAACGTGCTGGTCCGCGCCACGGGTGCCGGGCGGCTGGTGGGCACCGA
genomic: TTCTTCGCATCGTGGGAGTTCGGCAAGATGCTGGTAGATGGCAACCTTGCgtaagtacgc ... acatacacagGCACAACGTGCTGGTCCGCGCCACGGGTGCCGGGCGGCTGGTGGGCACCGA
EST: gi|23358829|gb|BU646649.1|BU646649
EST:     TTCTTCGCATCGTGGGAGTTCGGCAAGATGCTGGTAGATGGCAACCTTGC                         GCACAACGTGCTGGTCCGCGCCACGGGTGCCGGGCGGCTGGTGGGCACCGA
genomic: TTCTTCGCATCGTGGGAGTTCGGCAAGATGCTGGTAGATGGCAACCTTGCgtaagtacgc ... acatacacagGCACAACGTGCTGGTCCGCGCCACGGGTGCCGGGCGGCTGGTGGGCACCGA
EST: gi|8828338|gb|BE212068.1|BE212068
EST:     TTCTTCGCATCGTGGGAGTTCGGCAAGATGCTGGTAGATGGCAACCTTGC                         GCACAACGTGCTGGTCCGCGCCACGGGTGCCGGGCGGCTGGTGGGCACAGA
genomic: TTCTTCGCATCGTGGGAGTTCGGCAAGATGCTGGTAGATGGCAACCTTGCgtaagtacgc ... acatacacagGCACAACGTGCTGGTCCGCGCCACGGGTGCCGGGCGGCTGGTGGGCACCGA
EST: gi|49466505|gb|BP094418.1|BP094418
EST:     TTCTTCGCATCGTGGGAGTTCGGCAAGATGCTGGTAGATGGCAACCTTGC                         GCACAACGTGCTGGTCCGCGCCACGGGTGCCGGGCGGCTGGTGGGCACCGA
genomic: TTCTTCGCATCGTGGGAGTTCGGCAAGATGCTGGTAGATGGCAACCTTGCgtaagtacgc ... acatacacagGCACAACGTGCTGGTCCGCGCCACGGGTGCCGGGCGGCTGGTGGGCACCGA
EST: gi|10774774|gb|AV625597.1|AV625597
EST:     TTCTTCGCATCGTGGGAGTTCGGCAAGATGCTGGTAGATGGCAACCTTGC                         GCACAACGTGCTGGTCCGCGCCACGGGTGCCGGGCGGCTGGTGGGCACCGA
genomic: TTCTTCGCATCGTGGGAGTTCGGCAAGATGCTGGTAGATGGCAACCTTGCgtaagtacgc ... acatacacagGCACAACGTGCTGGTCCGCGCCACGGGTGCCGGGCGGCTGGTGGGCACCGA
EST: gi|22051020|gb|BQ809458.1|BQ809458
EST:     TTCTTCGCATCGTGGGAGTTCGGCAAGATGCTGGTAGATGGCAACCTTGC                         GCACAACGTGCTGGTCCGCGCCACGGGTGCCGGGCGGCTGGTGGGCACAGA
genomic: TTCTTCGCATCGTGGGAGTTCGGCAAGATGCTGGTAGATGGCAACCTTGCgtaagtacgc ... acatacacagGCACAACGTGCTGGTCCGCGCCACGGGTGCCGGGCGGCTGGTGGGCACCGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atctgggggggctgctgcacccccactccccagcactgcaacccttcctcaacccccccccccccgcccccgtcccgtctcattcccgacacatacacagGCACAACGTGCTGGTCCGCGCCACGGGTGCCGGGCGGCTGGTGGGCACCGACTACAACGGCAACCGGTACTACGAGAACGAGGAGGCGGCCTACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - accccca
- - - - - - - - - - - - - - -ccagcac