Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcttggaaggacctatggcgacagccctgttttctaggtttcctgtcgccactggcactgctattgactccctgctgatgtaaacacgcctctccatctgccttctggcgtgcgccttaacgcatattcgttacagGCATTTTCGCCAACTGGCTGGTGGGCATCGCCACATGGATGGCCAACGCGGCGCAGGACCTGACCGGCAAGGCGGTGGGCATCTGGCTGCCCATCTCCGC

Basic information

species Chlamydomonas reinhardtii
transcript EDO98442
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10790976|gb|AV628342.1|AV628342
EST:     CTGGAGTACGGCTGGGGTGCCGTGTTCGTGAAAG                         GCATTTTCGCCAACTGGCTGGTGGGCATCGCCACATGGATGGCCAACGCGG
genomic: CTGGAGTACGGCTGGGGTGCCGTGTTCGTGAAAGgtaaggcttg ... ttcgttacagGCATTTTCGCCAACTGGCTGGTGGGCATCGCCACATGGATGGCCAACGCGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacacgcctctccatctgccttctggcgtgcgccttaacgcatattcgttacagGCATTTTCGCCAACTGGCTGGTGGGCATCGCCACATGGATGGCCAACGCGGCGCAGGACCTGACCGGCAAGGCGGTGGGCATCTGGCTGCCCATCTCCGC
                                 ccttaac  putative branch site (score: 3)
                                          atatt  TA-rich tract