1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCCTGTGGGGCGAAAGGTGACGTTCAATGCTGCGTTGTCGAAGAATATGGACTCCGAGCGGATGACGGCGACAACAAAGCCCGTTCAGCTGGGGGCACCGgtgcgtgtggagccagagggggaggggggttgggcctgaatgttacggcgggccgtgcctgcaaatcctacctttccacactgtccggctgtgtccggct...
species | Chlamydomonas reinhardtii |
transcript | EDO98442 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACTCCGAGCGGATGACGGCGACAACAAAGCCCGTTCAGCTGGGGGCACCG ATGCCGAAATGGCCGGCCAATCATCAGTCCGCAGCTTTCGAGEST: gi|15692718|gb|BI717023.1|BI717023
genomic: ACTCCGAGCGGATGACGGCGACAACAAAGCCCGTTCAGCTGGGGGCACCGgtgcgtgtgg ... aaccacgcagATGCCGAAATGGCCGGCCAATCATCAGTCCGCAGCTTTCGAG
EST: ACTCCGAGCGGATGACGGCGACAACAAAGCCCGTTCAGCTGGGGGCACCG ATGCCGAAATGGCCGGCCAATCATCAGTCCGCAGCTTTCGAG
genomic: ACTCCGAGCGGATGACGGCGACAACAAAGCCCGTTCAGCTGGGGGCACCGgtgcgtgtgg ... aaccacgcagATGCCGAAATGGCCGGCCAATCATCAGTCCGCAGCTTTCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTGTGGGGCGAAAGGTGACGTTCAATGCTGCGTTGTCGAAGAATATGGACTCCGAGCGGATGACGGCGACAACAAAGCCCGTTCAGCTGGGGGCACCGgtgcgtgtggagccagagggggaggggggttgggcctgaatgttacggcgggccgtgcctgcaaatcctacctttccacactgtccggctgtgtccggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgtgt