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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGGAATGGCAATGTAGTAGGTGAGGCGCTGGGAAAACTGTCGCCGTTGTTCAAGGGCATTGGGTCGCCTGCTGTGGACGTCGAGGTGCCCGCCGACCAGgtaggttgttctcacgcctatatgccgccaagattgagacgcgccagcggctgcacggtggctggcaccgcaagaaggagcgactggcttaatcacattgatgttgttctgcgctggacttgccttgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98442
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14232647|gb|BG851463.1|BG851463
EST:     TCAAGGGCATTGGGTCGCCTGCTGTGGACGTCGAGGTGCCCGCCGACCAG                         GCGGAGCCCGTCGATGAGGCTGAGGTGAATGGCCGTGTATATCACGATGAG
genomic: TCAAGGGCATTGGGTCGCCTGCTGTGGACGTCGAGGTGCCCGCCGACCAGgtaggttgtt ... tgccttgcagGCGGAGCCCGTCGATGAGGCTGAGGTGAATGGCCGTGTATATCACGATGAG
EST: gi|15692718|gb|BI717023.1|BI717023
EST:     TCAAGGGCATTGGGTCGCCTGCTGTGGACGTCGAGGTGCCCGCCGACCAG                         GCGGAGCCCGTCGATGAGGCTGAGGTGAATGGCCGTGTATATCACGATGAG
genomic: TCAAGGGCATTGGGTCGCCTGCTGTGGACGTCGAGGTGCCCGCCGACCAGgtaggttgtt ... tgccttgcagGCGGAGCCCGTCGATGAGGCTGAGGTGAATGGCCGTGTATATCACGATGAG