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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAACgtaagcgttggcttggccatgtagggctttcgcagtcgctgcccgcggttttgtgggaacgacacttttgtaccgtaccgtatgccaaccttcctcgcggccttacccatcgctgccctgcacatgccgtcgtcacacatatgctgcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98428
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23367139|gb|BU654958.1|BU654958
EST:     GTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAAC                         CGCCTGAGCGGGCGAGCGTGCGCTTGGAGGTGCAACGCTGGTTGGCGGCGA
genomic: GTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAACgtaagcgttg ... tgctgcgcagCGCCTGGGCGGGCGAGCGTGCGCTTGGAGGTGCAACGCTGGTTGGCGGCGA
EST: gi|15692804|gb|BI717109.1|BI717109
EST:     GTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAAC                         CGCCTGGGCGGGCGAGCGTGCGCTTGGAGGTGCAACGCTGGTTGGCGGCGA
genomic: GTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAACgtaagcgttg ... tgctgcgcagCGCCTGGGCGGGCGAGCGTGCGCTTGGAGGTGCAACGCTGGTTGGCGGCGA
EST: gi|14239717|gb|BG858533.1|BG858533
EST:     GTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAAC                         CGCCTGNGCGGGCGAGCGTGCGCTTGGAGGTGCAACGCTGTTTGGCGGCGA
genomic: GTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAACgtaagcgttg ... tgctgcgcagCGCCTGGGCGGGCGAGCGTGCGCTTGGAGGTGCAACGCTGGTTGGCGGCGA
EST: gi|23365980|gb|BU653800.1|BU653800
EST:     GTCATGGGGCTGCCAGGCTTTCTTGCGTCGTTTATGCATAC                         CGNCTGTGCGGGCGAGCGTGCGCTTGGAGGTGCAACGCTGGTTTGGCG
genomic: GTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAACgtaagcgttg ... tgctgcgcagCGCCTGGGCGGGCGAGCGTGCGCTTGGAGGTGCAACGCTGGTT-GGCG
EST: gi|10790071|gb|AV627437.1|AV627437
EST:     GTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAAC                         CGCCTGNGCGGGCGAGCGTGCGCTTGGAGGTGCAACGCTGGTTGGCG
genomic: GTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAACgtaagcgttg ... tgctgcgcagCGCCTGGGCGGGCGAGCGTGCGCTTGGAGGTGCAACGCTGGTTGGCG