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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtactcagctatgatcagctcatgtaacatacataggaattagttactttactcaaggagctccttgtcgttcccgccttcttcacttgtttgtggtcgctccttgaccttctgtcgcttgctcttgtccttcttcttctcagAGCGAATTCTCTAACAACGCACAAGGGGCGTGGCAAGGGTGGACCAGCTGCCAGCAAAAGGGAGCGTCCTGCGCGGACGTGGACTCCATTGACGCTTCTT

Basic information

species Chlamydomonas reinhardtii
transcript EDO98428
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23367139|gb|BU654958.1|BU654958
EST:     TAATTGCCTCGTCGGCGTTTTCTGTCTTCGTCGCTCGGGCGAGCCCAAAT                         AGCGAATTCTCTAACAACGCACAAGGGGCGTGGCAAGGGTGGACCAGCTGC
genomic: TAATTGCCTCGTCGGCGTTTTCTGTCTTCGTCGCTCGGGCGAGCCCAAATgtgagtactc ... ttcttctcagAGCGAATTCTCTAACAACGCACAAGGGGCGTGGCAAGGGTGGACCAGCTGC
EST: gi|15692804|gb|BI717109.1|BI717109
EST:     TAATTGCCTCGTCGGCGTTTTCTGTCTTCGTCGCTCGGGCGAGCCCAAAT                         AGCGAATTCTCTAACAACGCACAAGGGGCGTGGCAAGGGTGGACCAGCTGC
genomic: TAATTGCCTCGTCGGCGTTTTCTGTCTTCGTCGCTCGGGCGAGCCCAAATgtgagtactc ... ttcttctcagAGCGAATTCTCTAACAACGCACAAGGGGCGTGGCAAGGGTGGACCAGCTGC
EST: gi|14239717|gb|BG858533.1|BG858533
EST:     TAATTGCCTCGTCGGCGTTTTCTGTCTTCGTCGCTCGGGCGAGCCCAAAT                         AGCGAATTCTCTAACAACGCACAAGGGGCGTGGCAAGGGTGGACCAGCTGC
genomic: TAATTGCCTCGTCGGCGTTTTCTGTCTTCGTCGCTCGGGCGAGCCCAAATgtgagtactc ... ttcttctcagAGCGAATTCTCTAACAACGCACAAGGGGCGTGGCAAGGGTGGACCAGCTGC
EST: gi|23365980|gb|BU653800.1|BU653800
EST:     TAATTGCCTAGTCGGCGTTTTCTGTCTTCGTCGCTCGGGCGAGCCCAAAT                         AGCGAATTCTCTAACAACGCACAAGGGGCGTGGCAAGGGTGGACCAGCTGC
genomic: TAATTGCCTCGTCGGCGTTTTCTGTCTTCGTCGCTCGGGCGAGCCCAAATgtgagtactc ... ttcttctcagAGCGAATTCTCTAACAACGCACAAGGGGCGTGGCAAGGGTGGACCAGCTGC
EST: gi|10790071|gb|AV627437.1|AV627437
EST:     TAATTGCCTCGTCGGCGTTTTCTGTCTTCGTCGCTCGGGCGAGCCCAAAT                         AGCGAATTCTCTAACAACGCACAAGGGGCGTGGCAAGGGTGGACCAGCTGC
genomic: TAATTGCCTCGTCGGCGTTTTCTGTCTTCGTCGCTCGGGCGAGCCCAAATgtgagtactc ... ttcttctcagAGCGAATTCTCTAACAACGCACAAGGGGCGTGGCAAGGGTGGACCAGCTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgtggtcgctccttgaccttctgtcgcttgctcttgtccttcttcttctcagAGCGAATTCTCTAACAACGCACAAGGGGCGTGGCAAGGGTGGACCAGCTGCCAGCAAAAGGGAGCGTCCTGCGCGGACGTGGACTCCATTGACGCTTCTT
             ccttgac  putative branch site (score: 4)
                   ccttctgtcgcttgct  CT-rich tract