1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gggagtacctgctcgaataaccgattagcgtacttgatgcagctggacacacagttgagcgcgccctaaccgcaacactgcgcacacacgactcctacagGTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAAC
species | Chlamydomonas reinhardtii |
transcript | EDO98428 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTCAGAACTAAAGGCGCCCTGTGATAGCCAAGAGAGCATGCAAGATTCG GTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAACEST: gi|15692804|gb|BI717109.1|BI717109
genomic: CTTCAGAACTAAAGGCGCCCTGTGATAGCCAAGAGAGCATGCAAGATTCGgtgggtaaac ... actcctacagGTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAAC
EST: CTTCAGAACTAAAGGCGCCCTGTGATAGCCAAGAGAGCATGCAAGATTCG GTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAACEST: gi|14239717|gb|BG858533.1|BG858533
genomic: CTTCAGAACTAAAGGCGCCCTGTGATAGCCAAGAGAGCATGCAAGATTCGgtgggtaaac ... actcctacagGTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAAC
EST: CTTCAGAACTAAAGGCGCCCTGTGATAGCCAAGAGAGCATGCAAGATTCG GTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAACEST: gi|23365980|gb|BU653800.1|BU653800
genomic: CTTCAGAACTAAAGGCGCCCTGTGATAGCCAAGAGAGCATGCAAGATTCGgtgggtaaac ... actcctacagGTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAAC
EST: CTTTAGAACTAAAGGCGCCCTGTGATAGCCAAGAGAGCATGCAAGATTCG GTCATGGGGCTGCCAGGCTTTCTTGCGTCGTTTATGCATACEST: gi|10790071|gb|AV627437.1|AV627437
genomic: CTTCAGAACTAAAGGCGCCCTGTGATAGCCAAGAGAGCATGCAAGATTCGgtgggtaaac ... actcctacagGTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAAC
EST: CTTCAGAACTAAAGGCGCCCTGTGATAGCCAAGAGAGCATGCAAGATTCG GTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAAC
genomic: CTTCAGAACTAAAGGCGCCCTGTGATAGCCAAGAGAGCATGCAAGATTCGgtgggtaaac ... actcctacagGTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAAC
gacacacagttgagcgcgccctaaccgcaacactgcgcacacacgactcctacagGTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAAC
ccctaac putative branch site (score: 2)
ctcctac putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggagtacctgctcgaataaccgattagcgtacttgatgcagctggacacacagttgagcgcgccctaaccgcaacactgcgcacacacgactcctacagGTCATGGGGCTGCCAGGCTTCCTTGCGTCGTTTATGCAAAC
- - - - - - - - - - - - - - - - - - - - - - - acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacacg