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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGGCTCCATGCTGTCTGATGACGTGGCGGAGAAGGGCTACACGCTGCTGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAGgtgcggaggctggagaagctgctaggcgttggggtctgggaggcgctctgggcattctacgtgaacagatatgtcgttgcaaacccgttctgacacacgaactgcatctgcgcctgtgtccgctatgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98400
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10771566|gb|AV622389.1|AV622389
EST:     TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAG                         GATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
genomic: TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAGgtgcggaggc ... cgctatgcagGATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
EST: gi|7426736|gb|AW660909.1|AW660909
EST:     TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAG                         GATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
genomic: TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAGgtgcggaggc ... cgctatgcagGATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
EST: gi|10768355|gb|AV619180.1|AV619180
EST:     TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAG                         GATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
genomic: TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAGgtgcggaggc ... cgctatgcagGATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
EST: gi|10768984|gb|AV619809.1|AV619809
EST:     TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAG                         GATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACA
genomic: TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAGgtgcggaggc ... cgctatgcagGATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACA
EST: gi|10770345|gb|AV621170.1|AV621170
EST:     TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAG                         GATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
genomic: TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAGgtgcggaggc ... cgctatgcagGATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
EST: gi|7413398|gb|AW652152.1|AW652152
EST:     TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAG                         GATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
genomic: TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAGgtgcggaggc ... cgctatgcagGATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
EST: gi|10771975|gb|AV622798.1|AV622798
EST:     TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAG                         GATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
genomic: TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAGgtgcggaggc ... cgctatgcagGATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
EST: gi|10778206|gb|AV634886.1|AV634886
EST:     TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAG                         GATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
genomic: TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAGgtgcggaggc ... cgctatgcagGATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
EST: gi|7593268|gb|AW707407.1|AW707407
EST:     TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAG                         GATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
genomic: TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAGgtgcggaggc ... cgctatgcagGATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
EST: gi|10773286|gb|AV624109.1|AV624109
EST:     TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAG                         GATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCG
genomic: TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAGgtgcggaggc ... cgctatgcagGATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCG
EST: gi|161790164|gb|FC076943.1|FC076943
EST:     TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAG                         GATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTGAGAGACAGAGGCA
genomic: TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAGgtgcggaggc ... cgctatgcagGATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
EST: gi|9458540|gb|BE452290.1|BE452290
EST:     TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAG                         GATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
genomic: TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAGgtgcggaggc ... cgctatgcagGATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
EST: gi|10771379|gb|AV622202.1|AV622202
EST:     TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAG                         GATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
genomic: TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAGgtgcggaggc ... cgctatgcagGATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
EST: gi|10768642|gb|AV619467.1|AV619467
EST:     TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAG                         GATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
genomic: TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAGgtgcggaggc ... cgctatgcagGATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
EST: gi|10769752|gb|AV620577.1|AV620577
EST:     TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAG                         GATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
genomic: TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAGgtgcggaggc ... cgctatgcagGATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGGCA
EST: gi|10772874|gb|AV623697.1|AV623697
EST:     TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAG                         GATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGG
genomic: TGTGCGTGGCCGTGCCCAAGTCCGACTGCCAGGTCAAGACCATTTCCGAGgtgcggaggc ... cgctatgcagGATGAGCTGCTGGACATGCAGCTGATGACCAGCCAGTAAGCGACAGAGG