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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGAGGGCGAGTCCATCCTAAGCGTGGCCCTGGACAAGGGTCTGGACCTCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggccgacacttaccgataatgagggtggcacaggtggtggacaagtgctctggccgcatttgtgaacgggtctagatgtgctgcgacatgctg...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98400
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22071397|gb|BQ820735.1|BQ820735
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGACACTGTGGATGCGTTTGGC
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGC
EST: gi|10770041|gb|AV620866.1|AV620866
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|10771566|gb|AV622389.1|AV622389
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|10779692|gb|AV636372.1|AV636372
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|7426736|gb|AW660909.1|AW660909
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|10768355|gb|AV619180.1|AV619180
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|10768984|gb|AV619809.1|AV619809
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|9441572|gb|BE442061.1|BE442061
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGACACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGAC
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGAC
EST: gi|10770345|gb|AV621170.1|AV621170
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|7413398|gb|AW652152.1|AW652152
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|10771975|gb|AV622798.1|AV622798
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|18690150|gb|BM518998.1|BM518998
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATG
EST: gi|10774406|gb|AV625229.1|AV625229
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTC
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTC
EST: gi|22071396|gb|BQ820734.1|BQ820734
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|10778206|gb|AV634886.1|AV634886
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|7593268|gb|AW707407.1|AW707407
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|10773286|gb|AV624109.1|AV624109
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|10774345|gb|AV625168.1|AV625168
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|161790164|gb|FC076943.1|FC076943
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|9458540|gb|BE452290.1|BE452290
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|10771379|gb|AV622202.1|AV622202
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|10768642|gb|AV619467.1|AV619467
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|10769752|gb|AV620577.1|AV620577
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|10775871|gb|AV632551.1|AV632551
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|10772874|gb|AV623697.1|AV623697
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: gi|10774257|gb|AV625080.1|AV625080
EST:     TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG                         GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCTGAGGGCGAGTCCATCCTAAGCGTGGCCCTGGACAAGGGTCTGGACCTCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggccgacacttaccgataatgagggtggcacaggtggtggacaagtgctctggccgcatttgtgaacgggtctagatgtgctgcgacatgctg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acactta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagatgt