1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgattaagcccaagcagctgttgcgcctcatacatgccggttggtcaacaagtgctgactaaccccttcacgaccacgttgcgccgtccgccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGGAGAAGGGCTACACGCTGCTGTGCGTGGCCGTGCCCAAGTCCGACTGCC
species | Chlamydomonas reinhardtii |
transcript | EDO98400 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGACACTGTGGATGCGTTTGGCEST: gi|10770041|gb|AV620866.1|AV620866
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGC
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|10771566|gb|AV622389.1|AV622389
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|10779692|gb|AV636372.1|AV636372
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|7426736|gb|AW660909.1|AW660909
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|10768355|gb|AV619180.1|AV619180
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|10768984|gb|AV619809.1|AV619809
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|9441572|gb|BE442061.1|BE442061
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGACACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACEST: gi|10770345|gb|AV621170.1|AV621170
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGAC
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|7413398|gb|AW652152.1|AW652152
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|10771975|gb|AV622798.1|AV622798
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|18690150|gb|BM518998.1|BM518998
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGEST: gi|10774406|gb|AV625229.1|AV625229
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCEST: gi|22071396|gb|BQ820734.1|BQ820734
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTC
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|10778206|gb|AV634886.1|AV634886
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|7593268|gb|AW707407.1|AW707407
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|10773286|gb|AV624109.1|AV624109
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|10774345|gb|AV625168.1|AV625168
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|161790164|gb|FC076943.1|FC076943
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|9458540|gb|BE452290.1|BE452290
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|10771379|gb|AV622202.1|AV622202
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|10768642|gb|AV619467.1|AV619467
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|10769752|gb|AV620577.1|AV620577
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|10775871|gb|AV632551.1|AV632551
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|10772874|gb|AV623697.1|AV623697
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGEST: gi|10774257|gb|AV625080.1|AV625080
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
EST: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTG GTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
genomic: TCCCCCACGACTGCAAGCTGGGCGTGTGCATGACCTGCCCTGCCAAGCTGgtgagagggc ... ccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCG
caacaagtgctgactaaccccttcacgaccacgttgcgccgtccgccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGGAGAAGGGCTACACGCTGCTGTGCGTGGCCGTGCCCAAGTCCGACTGCC
gactaac putative branch site (score: 1)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattaagcccaagcagctgttgcgcctcatacatgccggttggtcaacaagtgctgactaaccccttcacgaccacgttgcgccgtccgccaccggcagGTTTCGGGCACTGTGGATGCGTCTGGCTCCATGCTGTCTGATGACGTGGCGGAGAAGGGCTACACGCTGCTGTGCGTGGCCGTGCCCAAGTCCGACTGCC
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- - -aagccca
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