Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGCTGAAGGCGGGCAAGGAGGGCCGCTATGAGAACGAGGGGTACGGCGAGCGTCCGTACGACAACTGGGAGACCATCGAGTACGACTGCGAGGGGAAGgtgggtggtgatgaggagtgggaggggtggtgcaggaagggtgaggagtgtgggcctgtggggctgacgcgtggggatttcgggcgctcaatctggttag...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97898
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14237546|gb|BG856362.1|BG856362
EST:     AGCGTCCGTACGACAACTGGGAGACCATCGAGTACGACTGCGAGGGGAAG                         GAGTTCAAGACCGTCATGACGGCGCTCAAGTCCAACAATGAGCGCTGGGGC
genomic: AGCGTCCGTACGACAACTGGGAGACCATCGAGTACGACTGCGAGGGGAAGgtgggtggtg ... cgcaccacagGAGTTCAAGACCGTCATGACGGCGCTCAAGTCCAACAATGAGCGCTGGGGC
EST: gi|8286977|gb|BE024536.1|BE024536
EST:     AGCGTCCGTACGACAACTGGGAGACCATCGAGTACGACTGCGAGGGGAAG                         GAGTTCAAGACCGTCATGACGGCGCTCAAGTCCAACAATGAGCGCTGGGGC
genomic: AGCGTCCGTACGACAACTGGGAGACCATCGAGTACGACTGCGAGGGGAAGgtgggtggtg ... cgcaccacagGAGTTCAAGACCGTCATGACGGCGCTCAAGTCCAACAATGAGCGCTGGGGC
EST: gi|161795576|gb|FC085038.1|FC085038
EST:     AGCGTCCGTACGACAACTGGGAGACCATCGAGTACGACTGCGAGGGGAAG                         GAGTTCAAGACCGTCATGACGGCGCTCAAGTCCAACAATGAGCGCTGGGGC
genomic: AGCGTCCGTACGACAACTGGGAGACCATCGAGTACGACTGCGAGGGGAAGgtgggtggtg ... cgcaccacagGAGTTCAAGACCGTCATGACGGCGCTCAAGTCCAACAATGAGCGCTGGGGC
EST: gi|161793333|gb|FC078167.1|FC078167
EST:     AGCGTCCGTACGACAACTGGGAGACCATCGAGTACGACTGCGAGGGGAAG                         GAGTTCAAGACCGTCATGACGGCGCTCAAGTCCAACAATGAGCGCTGGGGC
genomic: AGCGTCCGTACGACAACTGGGAGACCATCGAGTACGACTGCGAGGGGAAGgtgggtggtg ... cgcaccacagGAGTTCAAGACCGTCATGACGGCGCTCAAGTCCAACAATGAGCGCTGGGGC
EST: gi|10191456|gb|BE761532.1|BE761532
EST:     AGCGTCCGTACGACAACTGGGAGACCATCGAGTACGACTGCGAGGGGAAG                         GAGTTCAAGACCGTCATGACGGCGCTCAAGTCCAACAATGAGCGCTGGGGC
genomic: AGCGTCCGTACGACAACTGGGAGACCATCGAGTACGACTGCGAGGGGAAGgtgggtggtg ... cgcaccacagGAGTTCAAGACCGTCATGACGGCGCTCAAGTCCAACAATGAGCGCTGGGGC
EST: gi|22065898|gb|BQ816624.1|BQ816624
EST:     GCGTCCGTACGACAACTTGGGAGACCATCGAGTACGACTGCGAGGGGAAG                         GAGTTTAAGACCGTTATGACGGCGC
genomic: GCGTCCGTACGACAACT-GGGAGACCATCGAGTACGACTGCGAGGGGAAGgtgggtggtg ... cgcaccacagGAGTTCAAGACCGTCATGACGGCGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTGCTGAAGGCGGGCAAGGAGGGCCGCTATGAGAACGAGGGGTACGGCGAGCGTCCGTACGACAACTGGGAGACCATCGAGTACGACTGCGAGGGGAAGgtgggtggtgatgaggagtgggaggggtggtgcaggaagggtgaggagtgtgggcctgtggggctgacgcgtggggatttcgggcgctcaatctggttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctggtt