1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccgcgtcttaccgtttcgtttcgaccgtgccgtattatgccgtacgtgccatccacacatacacacacacacacgtacatacatacacacgcgcgcgcagTTGTGCTGAAGGCGGGCAAGGAGGGCCGCTATGAGAACGAGGGGTACGGCGAGCGTCCGTACGACAACTGGGAGACCATCGAGTACGACTGCGAGGGGAA
species | Chlamydomonas reinhardtii |
transcript | EDO97898 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAGAGCGGCGCAGTGGCGGTGGGCGACATCCTGTCCCGCTGCAGCGCAG TTGTGCTGAAGGCGGGCAAGGAGGGCCGCTATGAGAACGAGGGGTACGGCGEST: gi|10781917|gb|AV638597.1|AV638597
genomic: CAAGAGCGGCGCAGTGGCGGTGGGCGACATCCTGTCCCGCTGCAGCGCAGgtgcgctggg ... gcgcgcgcagTTGTGCTGAAGGCGGGCAAGGAGGGCCGCTATGAGAACGAGGGGTACGGCG
EST: CAAGAGCGGCGCAGTGGCGGTGGGCGACATCCTGTCCCGCTGCAGCGCAG TTGTGCTGAAGGCGGGCAAGGAGGGCCGCTATGAGAACGAGGGGTACGGCGEST: gi|161795576|gb|FC085038.1|FC085038
genomic: CAAGAGCGGCGCAGTGGCGGTGGGCGACATCCTGTCCCGCTGCAGCGCAGgtgcgctggg ... gcgcgcgcagTTGTGCTGAAGGCGGGCAAGGAGGGCCGCTATGAGAACGAGGGGTACGGCG
EST: CAAGAGCGGCGCAGTGGCGGTGGGCGACATCCTGTCCCGCTGCAGCGCAG TTGTGCTGAAGGCGGGCAAGGAGGGCCGCTATGAGAACGAGGGGTACGGCGEST: gi|161793333|gb|FC078167.1|FC078167
genomic: CAAGAGCGGCGCAGTGGCGGTGGGCGACATCCTGTCCCGCTGCAGCGCAGgtgcgctggg ... gcgcgcgcagTTGTGCTGAAGGCGGGCAAGGAGGGCCGCTATGAGAACGAGGGGTACGGCG
EST: CAAGAGCGGCGCAGTGGCGGTGGGCGACATCCTGTCCCGCTGCAGCGCAG TTGTGCTGAAGGCGGGCAAGGAGGGCCGCTATGAGAACGAGGGGTACGGCGEST: gi|10191456|gb|BE761532.1|BE761532
genomic: CAAGAGCGGCGCAGTGGCGGTGGGCGACATCCTGTCCCGCTGCAGCGCAGgtgcgctggg ... gcgcgcgcagTTGTGCTGAAGGCGGGCAAGGAGGGCCGCTATGAGAACGAGGGGTACGGCG
EST: CAAGAGCGGCGCAGTGGCGGTGGGCGACATCCTGTCCCGCTGCAGCGCAG TTGTGCTGAAGGCGGGCAAGGAGGGCCGCTATGAGAACGAGGGGTACGGCGEST: gi|49470481|gb|BP098342.1|BP098342
genomic: CAAGAGCGGCGCAGTGGCGGTGGGCGACATCCTGTCCCGCTGCAGCGCAGgtgcgctggg ... gcgcgcgcagTTGTGCTGAAGGCGGGCAAGGAGGGCCGCTATGAGAACGAGGGGTACGGCG
EST: CAAGAGCGGCGCAGTGGCGGTGGGCGACATCCTGTCCCGCTGCAGCGCAG TTGTGCTGAAGGCGGGCAAGGAGGGCCGCTATGAGEST: gi|22065898|gb|BQ816624.1|BQ816624
genomic: CAAGAGCGGCGCAGTGGCGGTGGGCGACATCCTGTCCCGCTGCAGCGCAGgtgcgctggg ... gcgcgcgcagTTGTGCTGAAGGCGGGCAAGGAGGGCCGCTATGAG
EST: CAAGAGCGGCGCAGTGGCGGTGGGCGACATCCTGTCCCGCTGCAGCGCAG TTGTGCTGAAGGCGGGCAAGGAGGGCCGCTATGAGAACGAGGGGTACGGCG
genomic: CAAGAGCGGCGCAGTGGCGGTGGGCGACATCCTGTCCCGCTGCAGCGCAGgtgcgctggg ... gcgcgcgcagTTGTGCTGAAGGCGGGCAAGGAGGGCCGCTATGAGAACGAGGGGTACGGCG
gtgccatccacacatacacacacacacacgtacatacatacacacgcgcgcgcagTTGTGCTGAAGGCGGGCAAGGAGGGCCGCTATGAGAACGAGGGGTACGGCGAGCGTCCGTACGACAACTGGGAGACCATCGAGTACGACTGCGAGGGGAA
atacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgcgtcttaccgtttcgtttcgaccgtgccgtattatgccgtacgtgccatccacacatacacacacacacacgtacatacatacacacgcgcgcgcagTTGTGCTGAAGGCGGGCAAGGAGGGCCGCTATGAGAACGAGGGGTACGGCGAGCGTCCGTACGACAACTGGGAGACCATCGAGTACGACTGCGAGGGGAA
- - - - - - - ttcgttt
- - - - - - - - - - - - - - - - - - - - -gtacgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - ccacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacata