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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagttttgcggtcatggacgtggggcaatagcggtcggtcaacaagctttaagctaaagactcagtcaataccatctcgctgtgcgactattacagGCTCTGTGCGTGGCTGTGCCCGGCCAGTCGTTGCCCAGCACCGACCGGCTCGGTCGCGAGTGGTCAGCATTGCATG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97898
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14237546|gb|BG856362.1|BG856362
EST:     TGCTATTTGTCACAAGTCCTCATTAAAAATGTCGATGTGCATCGCGCGAG                         GCTCTGTGCGTGGCTGTGCCCGGCCAGTCGTTGCCCAGCACCGACCGGCTC
genomic: TGCTATTTGTCACAAGTCCTCATTAAAAATGTCGATGTGCATCGCGCGAGgcaagttttg ... actattacagGCTCTGTGCGTGGCTGTGCCCGGCCAGTCGTTGCCCAGCACCGACCGGCTC
EST: gi|10781917|gb|AV638597.1|AV638597
EST:     TGCTATTTGTCACAAGTCCTCATTAAAAATGTCGATGTGCATCGCGCGAG                         GCTCTGTGCGTGGCTGTGCCCGGCCAGTCGTTGCCCAGCACCGACCGGCTC
genomic: TGCTATTTGTCACAAGTCCTCATTAAAAATGTCGATGTGCATCGCGCGAGgcaagttttg ... actattacagGCTCTGTGCGTGGCTGTGCCCGGCCAGTCGTTGCCCAGCACCGACCGGCTC
EST: gi|161795576|gb|FC085038.1|FC085038
EST:     TTGTCACAAGTCCTCATTAAAAATGTCGATGTGCATCGCGCGAG                         GCTCTGTGCGTGGCTGTGCCCGGCCAGTCGTTGCCCAGCACCGACCGGCTC
genomic: TTGTCACAAGTCCTCATTAAAAATGTCGATGTGCATCGCGCGAGgcaagttttg ... actattacagGCTCTGTGCGTGGCTGTGCCCGGCCAGTCGTTGCCCAGCACCGACCGGCTC
EST: gi|161793333|gb|FC078167.1|FC078167
EST:     TTGTCACAAGTCCTCATTAAAAATGTCGATGTGCATCGCGCGAG                         GCTCTGTGCGTGGCTGTGCCCGGCCAGTCGTTGCCCAGCACCGACCGGCTC
genomic: TTGTCACAAGTCCTCATTAAAAATGTCGATGTGCATCGCGCGAGgcaagttttg ... actattacagGCTCTGTGCGTGGCTGTGCCCGGCCAGTCGTTGCCCAGCACCGACCGGCTC
EST: gi|10191456|gb|BE761532.1|BE761532
EST:     TGCTATTTGTCACAAGTCCTCATTAAAAATGTCGATGTGCATCGCGCGAG                         GCTCTGTGCGTGGCTGTGCCCGGCCAGTCGTTGCCCAGCACCGACCGGCTC
genomic: TGCTATTTGTCACAAGTCCTCATTAAAAATGTCGATGTGCATCGCGCGAGgcaagttttg ... actattacagGCTCTGTGCGTGGCTGTGCCCGGCCAGTCGTTGCCCAGCACCGACCGGCTC
EST: gi|49470481|gb|BP098342.1|BP098342
EST:     TGCTATTTGTCACAAGTCCTCATTAAAAATGTCGATGTGCATCGCGCGAG                         GCTCTGTGCGTGGCTGTGCCCGGCCAGTCGTTGCCCAGCACCGACCGGCTC
genomic: TGCTATTTGTCACAAGTCCTCATTAAAAATGTCGATGTGCATCGCGCGAGgcaagttttg ... actattacagGCTCTGTGCGTGGCTGTGCCCGGCCAGTCGTTGCCCAGCACCGACCGGCTC
EST: gi|22065898|gb|BQ816624.1|BQ816624
EST:     TGCTATTTGTCACAAGTCCTCATTAAAAATGTCGATGTGCATCGCGCGAG                         GCTCTGTGCGTGGCTGTGCCCGGCCAGTCGTTGCCCAGCACCGACCGGCTC
genomic: TGCTATTTGTCACAAGTCCTCATTAAAAATGTCGATGTGCATCGCGCGAGgcaagttttg ... actattacagGCTCTGTGCGTGGCTGTGCCCGGCCAGTCGTTGCCCAGCACCGACCGGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaagctttaagctaaagactcagtcaataccatctcgctgtgcgactattacagGCTCTGTGCGTGGCTGTGCCCGGCCAGTCGTTGCCCAGCACCGACCGGCTCGGTCGCGAGTGGTCAGCATTGCATG
          agctaaa  putative branch site (score: 3)
                                             actatta  TA-rich tract