1 5' 3' | 2 5' 3' |
GTGCAACTACGGATCTTACGAGGGCCGCTGCGTCATCTGCGGCGGGATAGGCATTTCGGACGCCTACTACTGCAAGGAGTGCACGTTGCAAGAAAAGGACgtgaggcggggcggtggggagggccagggcgcgtaggggagcgctgggtagttgtgaggggttgggtttggtgcgtgtcgggctgcgccacgatgccggc...
species | Chlamydomonas reinhardtii |
transcript | EDO97886 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCATTTCGGACGCCTACTACTGCAAGGAGTGCACGTTGCAAGAAAAGGAC AGAGACGGCTGCCCAAAGATCATCEST: gi|9028116|gb|BE238156.1|BE238156
genomic: GCATTTCGGACGCCTACTACTGCAAGGAGTGCACGTTGCAAGAAAAGGACgtgaggcggg ... ccactcgcagAGAGACGGCTGCCCAAAGATCATC
EST: GCATTTCGGACGCCTACTACTGCAAGGAGTGCACGTTGCAAGAAAAGGAC AGAGACGGCTGCCCAAAGATCATCAACCTCGGCTCCGCTAAAACCGACTTAEST: gi|15692131|gb|BI716436.1|BI716436
genomic: GCATTTCGGACGCCTACTACTGCAAGGAGTGCACGTTGCAAGAAAAGGACgtgaggcggg ... ccactcgcagAGAGACGGCTGCCCAAAGATCATCAACCTCGGCTCCGCTAAAACCGACTTA
EST: GCATTTCGGACGCCTACTACTGCAAGGAGTGCACGTTGCAAGAAAAGGAC AGAGACGGCTGCCCAAAGATCATCAACCTCGGCTCCGCTAAAACCGACTTAEST: gi|10772095|gb|AV622918.1|AV622918
genomic: GCATTTCGGACGCCTACTACTGCAAGGAGTGCACGTTGCAAGAAAAGGACgtgaggcggg ... ccactcgcagAGAGACGGCTGCCCAAAGATCATCAACCTCGGCTCCGCTAAAACCGACTTA
EST: GCATTTCGGACGCCTACTACTGCAAGGAGTGCACGTTGCAAGAAAAGGAC AGAGACGGCTGCCCAAAGATCATCAACCTCGGCTCCGCTAAAACCGACTTAEST: gi|8933075|gb|BE227836.1|BE227836
genomic: GCATTTCGGACGCCTACTACTGCAAGGAGTGCACGTTGCAAGAAAAGGACgtgaggcggg ... ccactcgcagAGAGACGGCTGCCCAAAGATCATCAACCTCGGCTCCGCTAAAACCGACTTA
EST: GCATTTCGGACGCCTACTACTGCAAGGAGTGCACGTTGCAAGAAAAGGAC AGAGACGGCTGCCCAAAGATCATCAACCTCGGCTCCGC
genomic: GCATTTCGGACGCCTACTACTGCAAGGAGTGCACGTTGCAAGAAAAGGACgtgaggcggg ... ccactcgcagAGAGACGGCTGCCCAAAGATCATCAACCTCGGCTCCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCAACTACGGATCTTACGAGGGCCGCTGCGTCATCTGCGGCGGGATAGGCATTTCGGACGCCTACTACTGCAAGGAGTGCACGTTGCAAGAAAAGGACgtgaggcggggcggtggggagggccagggcgcgtaggggagcgctgggtagttgtgaggggttgggtttggtgcgtgtcgggctgcgccacgatgccggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtgt