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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtccatatgtcgtggcgtcggctcgcagcaatcgactaaccggccctactcctttgctcgcagCCATTGGCCGCCTCTGCGAGAAGGATGATGGAAAGTGCCCAATTTGCGACTCCTATGTGCGCCCGTGCACCCTGGTACGCGTGTGCGACGAGTGCAACTA

Basic information

species Chlamydomonas reinhardtii
transcript EDO97886
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49469155|gb|BP097016.1|BP097016
EST:     GGCGAAGCATCACCCAGATCTTATTATGTGCATGAAGCAGCCAGGCGTGG                         CCATTGGCCGCCTCTGCGAGAAGGATGATGGAAAGTGCCCAATTTGCGACT
genomic: GGCGAAGCATCACCCAGATCTTATTATGTGCATGAAGCAGCCAGGCGTGGgtaagtccat ... ttgctcgcagCCATTGGCCGCCTCTGCGAGAAGGATGATGGAAAGTGCCCAATTTGCGACT
EST: gi|9028116|gb|BE238156.1|BE238156
EST:     GGCGAAGCATCACCCAGATCTTATTATGTGCATGAAGCAGCCAGGCGTGG                         CCATTGGCCGCCTCTGCGAGAAGGATGATGGAAAGTGCCCAATTTGCGACT
genomic: GGCGAAGCATCACCCAGATCTTATTATGTGCATGAAGCAGCCAGGCGTGGgtaagtccat ... ttgctcgcagCCATTGGCCGCCTCTGCGAGAAGGATGATGGAAAGTGCCCAATTTGCGACT
EST: gi|15692131|gb|BI716436.1|BI716436
EST:     GGCGAAGCATCACCCAGATCTTATTATGTGCATGAAGTAGCCAGGCGTGG                         CCATTGGCCGCCTCTGCGAGAAGGATGATGGAAAGTGCCCAATTTGCGACT
genomic: GGCGAAGCATCACCCAGATCTTATTATGTGCATGAAGCAGCCAGGCGTGGgtaagtccat ... ttgctcgcagCCATTGGCCGCCTCTGCGAGAAGGATGATGGAAAGTGCCCAATTTGCGACT
EST: gi|10772095|gb|AV622918.1|AV622918
EST:     GGCGAAGCATCACCCAGATCTTATTATGTGCATGAAGCAGCCAGGCGTGG                         CCATTGGCCGCCTCTGCGAGAAGGATGATGGAAAGTGCCCAATTTGCGACT
genomic: GGCGAAGCATCACCCAGATCTTATTATGTGCATGAAGCAGCCAGGCGTGGgtaagtccat ... ttgctcgcagCCATTGGCCGCCTCTGCGAGAAGGATGATGGAAAGTGCCCAATTTGCGACT
EST: gi|8933075|gb|BE227836.1|BE227836
EST:     GGCGAAGCATCACCCAGATCTTATTATGTGCATAAAGCAGCCAGGCGTGG                         CCATTGGCCGCCTCTGCGAGAAGGATGATGGAAAGTGCCCAATTTGCGACT
genomic: GGCGAAGCATCACCCAGATCTTATTATGTGCATGAAGCAGCCAGGCGTGGgtaagtccat ... ttgctcgcagCCATTGGCCGCCTCTGCGAGAAGGATGATGGAAAGTGCCCAATTTGCGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcgtggcgtcggctcgcagcaatcgactaaccggccctactcctttgctcgcagCCATTGGCCGCCTCTGCGAGAAGGATGATGGAAAGTGCCCAATTTGCGACTCCTATGTGCGCCCGTGCACCCTGGTACGCGTGTGCGACGAGTGCAACTA
                         gactaac  putative branch site (score: 1)
                                   ccctactcctttgctc  putative PPT