1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGCTCACACTGGACTGCTGCACAGAGGAGAGCCCCTGCATCCCCGCGGgtgggtaggcgggtgcgggtgtccacacgcgatacatacacacagacacacgccacgcgcgcgttgtcggttcccatccaacgcacgtacgcacgggtgt...
species | Chlamydomonas reinhardtii |
transcript | EDO97242 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTGCTCACACTGGACTGCTGCACAGAGGAGAGCCCCTGCATCCCCGCGG GGCGCTATGGAGTGGACATCGGGCCCGAGACCAGCGCGGCCTTCGGTGCGGEST: gi|6547098|gb|AV392882.1|AV392882
genomic: GTGCTCACACTGGACTGCTGCACAGAGGAGAGCCCCTGCATCCCCGCGGgtgggtaggc ... acatacacagGGCGCTATGGAGTGGACATCGGGCCCGAGACCAGCGCGGCCTTCGGTGCGG
EST: GTGCTCACACTGGACTGCTGCACAGAGGAGAGCCCCTGCATCCCCGCGG GGCGCTATGGAGTGGACATCGGGCCCGAGACCAGCGCGGCCTTCGGTGCGG
genomic: GTGCTCACACTGGACTGCTGCACAGAGGAGAGCCCCTGCATCCCCGCGGgtgggtaggc ... acatacacagGGCGCTATGGAGTGGACATCGGGCCCGAGACCAGCGCGGCCTTCGGTGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTCACACTGGACTGCTGCACAGAGGAGAGCCCCTGCATCCCCGCGGgtgggtaggcgggtgcgggtgtccacacgcgatacatacacacagacacacgccacgcgcgcgttgtcggttcccatccaacgcacgtacgcacgggtgt
- - - - - - - TGCTGC
- - - - - - - - - - - AGAGGA
- - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacacgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacgcac