1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ccggcgctgccgcaacgtccaccctgtctcacacttgtgtctcacatgcacgtgtcatgtatgtgccggtatatatgccgctgctcccccccacacacagGTGCTCACACTGGACTGCTGCACAGAGGAGAGCCCCTGCATCCCCGCGG
species | Chlamydomonas reinhardtii |
transcript | EDO97242 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACGTACTGTGGTCGTCCAGCCTGGCGGCGCCCGTGGACACGGGAGTGCAG GTGCTCACACTGGACTGCTGCACAGAGGAGAGCCCCTGCATCCCCGCGGEST: gi|6547098|gb|AV392882.1|AV392882
genomic: ACGTACTGTGGTCGTCCAGCCTGGCGGCGCCCGTGGACACGGGAGTGCAGgtgggcgggg ... ccacacacagGTGCTCACACTGGACTGCTGCACAGAGGAGAGCCCCTGCATCCCCGCGG
EST: CCAGCCTGGCGGCGCCCGTGGACACGGGAGTGCAG GTGCTCACACTGGACTGCTGCACAGAGGAGAGCCCCTGCATCCCCGCGG
genomic: CCAGCCTGGCGGCGCCCGTGGACACGGGAGTGCAGgtgggcgggg ... ccacacacagGTGCTCACACTGGACTGCTGCACAGAGGAGAGCCCCTGCATCCCCGCGG
atgcacgtgtcatgtatgtgccggtatatatgccgctgctcccccccacacacagGTGCTCACACTGGACTGCTGCACAGAGGAGAGCCCCTGCATCCCCGCGG
ccgctgctccccccc CT-rich tract
tatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccggcgctgccgcaacgtccaccctgtctcacacttgtgtctcacatgcacgtgtcatgtatgtgccggtatatatgccgctgctcccccccacacacagGTGCTCACACTGGACTGCTGCACAGAGGAGAGCCCCTGCATCCCCGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - acgtcca
- - - - - - - - - - - - - -ctcacac
- - - - - - - - - - - - - - - - - -tgtgtct
- - - - - - - - - - - - - - - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatatat