Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaggggttgcgtgcttgttttgttacttatgtgtatcgtgtgtttcgtgtgtgttagaacggagaactcatgagaaggcagtgccagcgcccaaagcactgcgcctgagcactccccctctcggcttggctgatccgcagGCAAGGGTATGCCTGGTCTCCGGGCGCTGCTGCGGGGGCGCACCGTGTCTGCGTCAGCACCCGCGCCGGCGCCCGCCCCTGCTCCGGCGCCAACGCCTGT

Basic information

species Chlamydomonas reinhardtii
transcript EDO97242
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|239842136|gb|GR283993.1|GR283993
EST:     CATCACCCACATCTCCACAGGTGGCGGAGCGTCCCTGGAGTTGATCGAGG                         GCAAGGGTATGCCTGGTCTCCGGGCGCTGCTGCGGGGGCGCACCGTGTCTG
genomic: CATCACCCACATCTCCACAGGTGGCGGAGCGTCCCTGGAGTTGATCGAGGgtgagagggg ... tgatccgcagGCAAGGGTATGCCTGGTCTCCGGGCGCTGCTGCGGGGGCGCACCGTGTCTG
EST: gi|6547098|gb|AV392882.1|AV392882
EST:     CATCACCCACATCTCCACAGGTGGCGGAGCGTCCCTGGAGTTGATCGAGG                         GCAAGGGTATGCCTGGTCTCCGGGCGCTGCTGCGGGGGCGCACCGTGTCTG
genomic: CATCACCCACATCTCCACAGGTGGCGGAGCGTCCCTGGAGTTGATCGAGGgtgagagggg ... tgatccgcagGCAAGGGTATGCCTGGTCTCCGGGCGCTGCTGCGGGGGCGCACCGTGTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcgcccaaagcactgcgcctgagcactccccctctcggcttggctgatccgcagGCAAGGGTATGCCTGGTCTCCGGGCGCTGCTGCGGGGGCGCACCGTGTCTGCGTCAGCACCCGCGCCGGCGCCCGCCCCTGCTCCGGCGCCAACGCCTGT
                                          ggctgat  putative branch site (score: 4)