1 5' 3' | 2 5' 3' |
CTGGCGGGAGGAGGTCAGCCAGGACAACCCGCTGGTGTTTGAGGGCGCGCTGTGCCGCAGCAAGCTCGAGGCGCTCGCGCACACACTGGGGCACGAGCTGgtgcgtgggggccgtggcgctgggccgcgggttagggtgatggttcggggacttggtaagctgggggaagggaggcactggatgggcgtggagggatttg...
species | Chlamydomonas reinhardtii |
transcript | EDO97216 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTGCCGCAGCAAGCTCGAGGCGCTCGCGCACACACTGGGGCACGAGCTG ACGCACGCGGTGGTTCTAAACTTCTTCCCTGCTATGGACGCCTCGTCGCCCEST: gi|161816571|gb|FC105670.1|FC105670
genomic: TGTGCCGCAGCAAGCTCGAGGCGCTCGCGCACACACTGGGGCACGAGCTGgtgcgtgggg ... tcacccgcagACGCACGCGGTGGTTCTAAACTTCTTCCCTGCTATGGACGCCTCGTCGCCC
EST: TGTGCCGCAGCAAGCTTGAGGCGCTCGCGCACACACTGGGACACGAGCTG ACGCACGCGGTGGTTCTAAACTTCTTCCCTGCTATGGACGCCTCGTCGCCT
genomic: TGTGCCGCAGCAAGCTCGAGGCGCTCGCGCACACACTGGGGCACGAGCTGgtgcgtgggg ... tcacccgcagACGCACGCGGTGGTTCTAAACTTCTTCCCTGCTATGGACGCCTCGTCGCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGCGGGAGGAGGTCAGCCAGGACAACCCGCTGGTGTTTGAGGGCGCGCTGTGCCGCAGCAAGCTCGAGGCGCTCGCGCACACACTGGGGCACGAGCTGgtgcgtgggggccgtggcgctgggccgcgggttagggtgatggttcggggacttggtaagctgggggaagggaggcactggatgggcgtggagggatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttagggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggatgg