1 5' 3' | 2 5' 3' |
GCCGCTGGACTTCACGCCCAATGACGTGACGCCTGAGCAGCTGCAGGCGCTGTGCGACGCCGTGGAGGCTGAGTTCCTAGGGGGCCTCCTGGCAGAGCAGgtacgaagctgttggttatatgctgtacagtctcgttgggtggttgtggaaagggtggtcgcagggagtgggcgcgggaaggagcgtgggcggcagggtt...
species | Chlamydomonas reinhardtii |
transcript | EDO97216 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTGCGACGCCGTGGAGGCTGAGTTCCTAGGGGGCCTCCTGGCAGAGCAG GTACGGCGGGCGGGCCGGCCACGCATCCGTGTGGTCCTGGGCGTGGACCCTEST: gi|9441517|gb|BE442007.1|BE442007
genomic: TGTGCGACGCCGTGGAGGCTGAGTTCCTAGGGGGCCTCCTGGCAGAGCAGgtacgaagct ... tctaccacagGTACGGCGGGCGGGCCGGCCACGCATCCGTGTGGTCCTGGGCGTGGACCCT
EST: TGTGCGACGCCGTGGAGGCTGAGTTTCTAGGGGGCCTCCTGGCAGAGCAG GTACGGCGGGCGGGCCGGGCGCGCATCCGTGTGGTCCTGGGCGTGGACCCTEST: gi|161816571|gb|FC105670.1|FC105670
genomic: TGTGCGACGCCGTGGAGGCTGAGTTCCTAGGGGGCCTCCTGGCAGAGCAGgtacgaagct ... tctaccacagGTACGGCGGGCGGGCCGGCCACGCATCCGTGTGGTCCTGGGCGTGGACCCT
EST: TGTGCGACGCCGTGGAGGCTGAGTTTCTAGGGGGCCTCCTGGCAGAGCAG GTACGGCGGGCGGGCCGGCCGCGCATCCGTGTGGTCCTGGGCGTGGACCCTEST: gi|16071684|gb|BI873680.1|BI873680
genomic: TGTGCGACGCCGTGGAGGCTGAGTTCCTAGGGGGCCTCCTGGCAGAGCAGgtacgaagct ... tctaccacagGTACGGCGGGCGGGCCGGCCACGCATCCGTGTGGTCCTGGGCGTGGACCCT
EST: TGTGCGACGCCGTGGAGGCTGAGTTCCTAGGGGGCCTCCTGGCAGAGCAG GTACGGCGGGCGGGCCGGCCACGCATCCGTGTGGTCCTGGGCGTGGACCCT
genomic: TGTGCGACGCCGTGGAGGCTGAGTTCCTAGGGGGCCTCCTGGCAGAGCAGgtacgaagct ... tctaccacagGTACGGCGGGCGGGCCGGCCACGCATCCGTGTGGTCCTGGGCGTGGACCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGCTGGACTTCACGCCCAATGACGTGACGCCTGAGCAGCTGCAGGCGCTGTGCGACGCCGTGGAGGCTGAGTTCCTAGGGGGCCTCCTGGCAGAGCAGgtacgaagctgttggttatatgctgtacagtctcgttgggtggttgtggaaagggtggtcgcagggagtgggcgcgggaaggagcgtgggcggcagggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagggt