Sequence
atgc intronic sequence ATGC exonic sequence...gctaccagtatcacgctacggctgagttctcccctcctggctgacgtgctactgcactcgcctgctcgcccgctgtgcacgcacacgcactcacccgcagACGCACGCGGTGGTTCTAAACTTCTTCCCTGCTATGGACGCCTCGTCGCCCGCCTACACGCCCGACGATAAGCACGGCCCCGTATTCATGTGGCTCAATC
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDO97216 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23365953|gb|BU653773.1|BU653773EST: TGTGCCGCAGCAAGCTCGAGGCGCTCGCGCACACACTGGGGCACGAGCTG ACGCACGCGGTGGTTCTAAACTTCTTCCCTGCTATGGACGCCTCGTCGCCC
genomic: TGTGCCGCAGCAAGCTCGAGGCGCTCGCGCACACACTGGGGCACGAGCTGgtgcgtgggg ... tcacccgcagACGCACGCGGTGGTTCTAAACTTCTTCCCTGCTATGGACGCCTCGTCGCCC
EST:
gi|161816571|gb|FC105670.1|FC105670EST: TGTGCCGCAGCAAGCTTGAGGCGCTCGCGCACACACTGGGACACGAGCTG ACGCACGCGGTGGTTCTAAACTTCTTCCCTGCTATGGACGCCTCGTCGCCT
genomic: TGTGCCGCAGCAAGCTCGAGGCGCTCGCGCACACACTGGGGCACGAGCTGgtgcgtgggg ... tcacccgcagACGCACGCGGTGGTTCTAAACTTCTTCCCTGCTATGGACGCCTCGTCGCCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgctactgcactcgcctgctcgcccgctgtgcacgcacacgcactcacccgcagACGCACGCGGTGGTTCTAAACTTCTTCCCTGCTATGGACGCCTCGTCGCCCGCCTACACGCCCGACGATAAGCACGGCCCCGTATTCATGTGGCTCAATC
cactcac putative branch site (score: 2)
ctcaccc CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gctaccagtatcacgctacggctgagttctcccctcctggctgacgtgctactgcactcgcctgctcgcccgctgtgcacgcacacgcactcacccgcagACGCACGCGGTGGTTCTAAACTTCTTCCCTGCTATGGACGCCTCGTCGCCCGCCTACACGCCCGACGATAAGCACGGCCCCGTATTCATGTGGCTCAATC
- - - - - tcacgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcacgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacgca