1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agtgcgcgggccctgtcgcagggcatggcgtgtctccttgtcctcacatgcctgacgtgctgctgatgttgccggtgctgccctaacgcgccgcctgcagGCGACTGGGTTGAGGACGTGATGCAGGGCCAGGGGACATATACCTACCCCAATGGTGACATCTACCAG
species | Chlamydomonas reinhardtii |
transcript | EDO97214 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGCACGGGAAAGGGAAAATGGTGTACCCTGACAAGGGCGTGTATGAAG GCGACTGGGTTGAGGACGTGATGCAGGGCCAGGGGACATATACCTACCCCAEST: gi|16432414|gb|BI997640.1|BI997640
genomic: GAAGCACGGGAAAGGGAAAATGGTGTACCCTGACAAGGGCGTGTATGAAGgtgagggatg ... ccgcctgcagGCGACTGGGTTGAGGACGTGATGCAGGGCCAGGGGACATATACCTACCCCA
EST: GAAGCACGGGAAAGGGAAAATGGTGTACCCTGACAAGGGCGTGTATGAAG GCGACTGGGTTGAGGACGTGATGCAGGGCCAGGGGACATATACCTACCCCAEST: gi|6540871|gb|AV386655.1|AV386655
genomic: GAAGCACGGGAAAGGGAAAATGGTGTACCCTGACAAGGGCGTGTATGAAGgtgagggatg ... ccgcctgcagGCGACTGGGTTGAGGACGTGATGCAGGGCCAGGGGACATATACCTACCCCA
EST: GAAGCACGGGAAAGGGAAAATGGTGTACCCTGACAAGGGCGTGTATGAAG GCGACTGGGTTGAGGACGTGATGCAGGGCCAGGGGACATATACCTACCCCAEST: gi|15696318|gb|BI720623.1|BI720623
genomic: GAAGCACGGGAAAGGGAAAATGGTGTACCCTGACAAGGGCGTGTATGAAGgtgagggatg ... ccgcctgcagGCGACTGGGTTGAGGACGTGATGCAGGGCCAGGGGACATATACCTACCCCA
EST: GAAGCACGGGAAAGGGAAAATGGTGTACCCTGACAAGGGCGTGTATGAAG GCGACTGGGTTGAGGACGTGATGCAGGGCCAGGGGACATATACCTACCCCA
genomic: GAAGCACGGGAAAGGGAAAATGGTGTACCCTGACAAGGGCGTGTATGAAGgtgagggatg ... ccgcctgcagGCGACTGGGTTGAGGACGTGATGCAGGGCCAGGGGACATATACCTACCCCA
acatgcctgacgtgctgctgatgttgccggtgctgccctaacgcgccgcctgcagGCGACTGGGTTGAGGACGTGATGCAGGGCCAGGGGACATATACCTACCCCAATGGTGACATCTACCAG
ccctaac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgcgcgggccctgtcgcagggcatggcgtgtctccttgtcctcacatgcctgacgtgctgctgatgttgccggtgctgccctaacgcgccgcctgcagGCGACTGGGTTGAGGACGTGATGCAGGGCCAGGGGACATATACCTACCCCAATGGTGACATCTACCAG
- - - - - - - - - - - - - - - - - - - - - - - -atgcctg