1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtggtggggcggggctgggacgcggctgcaagggcgatacccacctgacgttgctgagcgttcaacacagccctcgttgtcatggcacccgtcgcaacgctggtgggccatggctcaaccgcacatgcaaacccctgtctggcgtgcagGGCAAGATGGAGTACCCTCCCCCTCCCATGGGCGAGGACGACGAGGAGGAGAAGCCGGGCGACAAGTTTGAGGGGACGATGGAGCATGGCGTGCGGACGG
species | Chlamydomonas reinhardtii |
transcript | EDO97214 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTG GGCAAGATGGAGTACCCTCCCCCTCCCATGGGCGAGGACGACGAGGAGGAGEST: gi|23359092|gb|BU646912.1|BU646912
genomic: GTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTGgtaagtggtg ... tggcgtgcagGGCAAGATGGAGTACCCTCCCCCTCCCATGGGCGAGGACGACGAGGAGGAG
EST: GTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTG GGCAAGATGGAGTACCCTCCCCCTCCCATGGGCGAGGACGACGAGGAGGAGEST: gi|16432414|gb|BI997640.1|BI997640
genomic: GTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTGgtaagtggtg ... tggcgtgcagGGCAAGATGGAGTACCCTCCCCCTCCCATGGGCGAGGACGACGAGGAGGAG
EST: GTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTG GGCAAGATGGAGTACCCTCCCCCTCCCATGGGCGAGGACGACGAGGAGGAGEST: gi|6540871|gb|AV386655.1|AV386655
genomic: GTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTGgtaagtggtg ... tggcgtgcagGGCAAGATGGAGTACCCTCCCCCTCCCATGGGCGAGGACGACGAGGAGGAG
EST: GTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTG GGCAAGATGGAGTACCCTCCCCCTCCCATGGGCGAGGACGACGAGGAGGAGEST: gi|15696318|gb|BI720623.1|BI720623
genomic: GTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTGgtaagtggtg ... tggcgtgcagGGCAAGATGGAGTACCCTCCCCCTCCCATGGGCGAGGACGACGAGGAGGAG
EST: GTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTG GGCAAGATGGAGTACCCTCCCCCTCCCATGGGCGAGGACGACGAGGAGGAG
genomic: GTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTGgtaagtggtg ... tggcgtgcagGGCAAGATGGAGTACCCTCCCCCTCCCATGGGCGAGGACGACGAGGAGGAG
caacgctggtgggccatggctcaaccgcacatgcaaacccctgtctggcgtgcagGGCAAGATGGAGTACCCTCCCCCTCCCATGGGCGAGGACGACGAGGAGGAGAAGCCGGGCGACAAGTTTGAGGGGACGATGGAGCATGGCGTGCGGACGG
cccctgtct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggtggggcggggctgggacgcggctgcaagggcgatacccacctgacgttgctgagcgttcaacacagccctcgttgtcatggcacccgtcgcaacgctggtgggccatggctcaaccgcacatgcaaacccctgtctggcgtgcagGGCAAGATGGAGTACCCTCCCCCTCCCATGGGCGAGGACGACGAGGAGGAGAAGCCGGGCGACAAGTTTGAGGGGACGATGGAGCATGGCGTGCGGACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
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