1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacgccgcagctcctatttgcaacatcatcagtttgctttcgtgactgcccgtggaccgcgctcagccatggccgcttccttgtatttgcagGTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTG
species | Chlamydomonas reinhardtii |
transcript | EDO97214 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGAAAAGCACTAACGCAGAATGGCTGACGACGAGCTTCCTCCCCAGCCG GTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTGEST: gi|23359092|gb|BU646912.1|BU646912
genomic: GCGAAAAGCACTAACGCAGAATGGCTGACGACGAGCTTCCTCCCCAGCCGgtacgccgca ... gtatttgcagGTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTG
EST: GCGAAAAGCACTAACGCAGAATGGCTGACGACGAGCTTCCTCCCCAGCCG GTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTGEST: gi|16432414|gb|BI997640.1|BI997640
genomic: GCGAAAAGCACTAACGCAGAATGGCTGACGACGAGCTTCCTCCCCAGCCGgtacgccgca ... gtatttgcagGTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTG
EST: GCGAAAAGCACTAACGCAGAATGGCTGACGACGAGCTTCCTCCCCAGCCG GTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTGEST: gi|6540871|gb|AV386655.1|AV386655
genomic: GCGAAAAGCACTAACGCAGAATGGCTGACGACGAGCTTCCTCCCCAGCCGgtacgccgca ... gtatttgcagGTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTG
EST: GCGAAAAGCACTAACGCAGAATGGCTGACGACGAGCTTCCTCCCCAGCCG GTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTGEST: gi|15696318|gb|BI720623.1|BI720623
genomic: GCGAAAAGCACTAACGCAGAATGGCTGACGACGAGCTTCCTCCCCAGCCGgtacgccgca ... gtatttgcagGTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTG
EST: GCGAAAAGCACTAACGCAGAATGGCTGACGACGAGCTTCCTCCCCAGCCG GTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTG
genomic: GCGAAAAGCACTAACGCAGAATGGCTGACGACGAGCTTCCTCCCCAGCCGgtacgccgca ... gtatttgcagGTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTG
tttcgtgactgcccgtggaccgcgctcagccatggccgcttccttgtatttgcagGTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTG
cttccttgt CT-rich tract
ttgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgccgcagctcctatttgcaacatcatcagtttgctttcgtgactgcccgtggaccgcgctcagccatggccgcttccttgtatttgcagGTGTGGGAGGGACCCCTCGACGAGGACGGCAAGCCACATGGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA