1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacgctggctgcgactgctaccgccctctcgcgcacgtgtaccgttgtcatttgccccaaactccacgcccccacgcccaccccaacggaactcttcaacccccacatggacctgcagCACATGAAGGGCATCGACAAGGACATCCTGGAGGAGCTGCCGCGCTACCAGCAGCAGCTGACGGAGGAGCACGGCCAGTCCGCCATCGCGCTGTGCCTGC
species | Chlamydomonas reinhardtii |
transcript | EDO97070 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCGAGGAGACGTCGTCGCACTATGAGTGCATGCGCGTCGAAGAGCTGAAG CACATGAAGGGCATCGACAAGGACATCCTGGAGGAGCTGCCGCGCTACCAGEST: gi|15372305|gb|BI531731.1|BI531731
genomic: GCGAGGAGACGTCGTCGCACTATGAGTGCATGCGCGTCGAAGAGCTGAAGgtacgctggc ... ggacctgcagCACATGAAGGGCATCGACAAGGACATCCTGGAGGAGCTGCCGCGCTACCAG
EST: GCGAGGAGACGTCGTCGCACTATGAGTGCATGCGCGTCGAAGAGCTGAAG CACATGAAGGGCATCGACAAGGACATCCTGGAGGAGCTGCCGCGCTACCAGEST: gi|10769559|gb|AV620384.1|AV620384
genomic: GCGAGGAGACGTCGTCGCACTATGAGTGCATGCGCGTCGAAGAGCTGAAGgtacgctggc ... ggacctgcagCACATGAAGGGCATCGACAAGGACATCCTGGAGGAGCTGCCGCGCTACCAG
EST: GCGAGGAGACGTCGTCGCACTATGAGTGCATGCGCGTCGAAGAGCTGAAG CACATGAAGGGCATCGACAAGGACATCCTGGAGGAGCTGCCGCGCTACCAGEST: gi|9210899|gb|BE337814.1|BE337814
genomic: GCGAGGAGACGTCGTCGCACTATGAGTGCATGCGCGTCGAAGAGCTGAAGgtacgctggc ... ggacctgcagCACATGAAGGGCATCGACAAGGACATCCTGGAGGAGCTGCCGCGCTACCAG
EST: GCGAGGAGACGTCGTCGCACTATGAGTGCATGCGCGTCGAAGAGCTGAAG CACATGAAGGGCATCGACAAGGACATCCTGGAGGAGCTGCCGCGCTACCAG
genomic: GCGAGGAGACGTCGTCGCACTATGAGTGCATGCGCGTCGAAGAGCTGAAGgtacgctggc ... ggacctgcagCACATGAAGGGCATCGACAAGGACATCCTGGAGGAGCTGCCGCGCTACCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgctggctgcgactgctaccgccctctcgcgcacgtgtaccgttgtcatttgccccaaactccacgcccccacgcccaccccaacggaactcttcaacccccacatggacctgcagCACATGAAGGGCATCGACAAGGACATCCTGGAGGAGCTGCCGCGCTACCAGCAGCAGCTGACGGAGGAGCACGGCCAGTCCGCCATCGCGCTGTGCCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA