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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcatcgctacacatgcgcaattcagtgtcggacctgcctcttgacttctccgaactgcaacacgagctcattatcgcatgtatgcacagATGCTTGTGACAAATGTACAAACGGCGGCCCTATGCGAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97070
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15692583|gb|BI716888.1|BI716888
EST:     TGGGAAAGGAATGTTATCTCACTTCAACGGCAGCCAGGAGAAAGTTTACG                         ATGCTTGTGACAAATGTACAAACGGCGGCCCTATGCGAG
genomic: TGGGAAAGGAATGTTATCTCACTTCAACGGCAGCCAGGAGAAAGTTTACGgtaaggcatc ... gtatgcacagATGCTTGTGACAAATGTACAAACGGCGGCCCTATGCGAG
EST: gi|15372305|gb|BI531731.1|BI531731
EST:     TGGGAAAGGAATGTTATCTCACTTCAACGGCAGCCAGGAGAAAGTTTACG                         ATGCTTGTGACAAATGTACAAACGGCGGCCCTATGCGAG
genomic: TGGGAAAGGAATGTTATCTCACTTCAACGGCAGCCAGGAGAAAGTTTACGgtaaggcatc ... gtatgcacagATGCTTGTGACAAATGTACAAACGGCGGCCCTATGCGAG
EST: gi|10769559|gb|AV620384.1|AV620384
EST:     TGGGAAAGGAATGTTATCTCACTTCAACGGCAGCCAGGAGAAAGTTTACG                         ATGCTTGTGACAAATGTACAAACGGCGGCCCTATGCGAG
genomic: TGGGAAAGGAATGTTATCTCACTTCAACGGCAGCCAGGAGAAAGTTTACGgtaaggcatc ... gtatgcacagATGCTTGTGACAAATGTACAAACGGCGGCCCTATGCGAG
EST: gi|9210899|gb|BE337814.1|BE337814
EST:     TGGGAAAGGAATGTTATCTCACTTCAACGGCAGCCAGGAGAAAGTTTACG                         ATGCTTGTGACAAATGTACAAACGGCGGCCCTATGCGAG
genomic: TGGGAAAGGAATGTTATCTCACTTCAACGGCAGCCAGGAGAAAGTTTACGgtaaggcatc ... gtatgcacagATGCTTGTGACAAATGTACAAACGGCGGCCCTATGCGAG
EST: gi|6543692|gb|AV389476.1|AV389476
EST:     TGGGAAAGGAATGTTATCTCACTTCAACGGCAGCCAGGAGAAAGTTTACG                         ATGCTTGTGACAAATGTACAAACGGCGGCCCTATGCGAG
genomic: TGGGAAAGGAATGTTATCTCACTTCAACGGCAGCCAGGAGAAAGTTTACGgtaaggcatc ... gtatgcacagATGCTTGTGACAAATGTACAAACGGCGGCCCTATGCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcctcttgacttctccgaactgcaacacgagctcattatcgcatgtatgcacagATGCTTGTGACAAATGTACAAACGGCGGCCCTATGCGAG
    tcttgac  putative branch site (score: 3)
                                 tcattat  TA-rich tract