1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTTCCCCGACTCCCGTATGCGCCCGCCCATCGCCACCATCCCCAAGTGGCTGCTGTGGCTGATTGGGCCCATGGCAGGCATGAGCCGCGACATCGTCACgtgagtgcgggtcggtgtcaggggccgcgaaggggataacagagcctaagagccgttacgcacgggggcgaaaggcgcattctgctgcaagcggcggcac...
species | Chlamydomonas reinhardtii |
transcript | EDO96980 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTGCTGTGGCTGATTGGGCCCATGGCAGGCATGAGCCGCGACATCGTCAC CCATTCCGTGAACATGTGCCCCCAGTTCAACAACAGCAAGATCCAGTCGGAEST: gi|10774710|gb|AV625533.1|AV625533
genomic: CTGCTGTGGCTGATTGGGCCCATGGCAGGCATGAGCCGCGACATCGTCACgtgagtgcgg ... ccctccgcagCCATTCCGTGAACATGTGCCCCCAGTTCAACAACAGCAAGATCCAGTCGGA
EST: CTGCTGTGGCTGATTGGGCCCATGGCAGGCATGAGCCGCGACATCGTCAC CCATTCCGTGAACATGTGCCCCCAGTTCAACAACAGCAAGATCCAGTCGGAEST: gi|23358394|gb|BU646214.1|BU646214
genomic: CTGCTGTGGCTGATTGGGCCCATGGCAGGCATGAGCCGCGACATCGTCACgtgagtgcgg ... ccctccgcagCCATTCCGTGAACATGTGCCCCCAGTTCAACAACAGCAAGATCCAGTCGGA
EST: TTGGGCCCATGGCAGGCATGAGCCGCGACATCGTCAC CCATTCCGTGAACATGTGCCCCCAGTTCAACAACAGCAAGATCCAGTCGGAEST: gi|14225959|gb|BG844775.1|BG844775
genomic: TTGGGCCCATGGCAGGCATGAGCCGCGACATCGTCACgtgagtgcgg ... ccctccgcagCCATTCCGTGAACATGTGCCCCCAGTTCAACAACAGCAAGATCCAGTCGGA
EST: CTGCTGTGGCTGATTGGGCCCATGGCAGGCATGAGCCGCGACATCGTCAC CCATTCCGTGAACATGTGCCCCCAGTTCAACAACAGCAAGATCCAGTCGGAEST: gi|14226545|gb|BG845377.1|BG845377
genomic: CTGCTGTGGCTGATTGGGCCCATGGCAGGCATGAGCCGCGACATCGTCACgtgagtgcgg ... ccctccgcagCCATTCCGTGAACATGTGCCCCCAGTTCAACAACAGCAAGATCCAGTCGGA
EST: CTGCTGTGGCTGATTGGGCCCATGGCAGGCATGAGCCGCGACATCGTCAC CCATTCCGTGAACATGTGCCCCCAGTTCAACAACAGCAAGATCCAGTCGGA
genomic: CTGCTGTGGCTGATTGGGCCCATGGCAGGCATGAGCCGCGACATCGTCACgtgagtgcgg ... ccctccgcagCCATTCCGTGAACATGTGCCCCCAGTTCAACAACAGCAAGATCCAGTCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTCCCCGACTCCCGTATGCGCCCGCCCATCGCCACCATCCCCAAGTGGCTGCTGTGGCTGATTGGGCCCATGGCAGGCATGAGCCGCGACATCGTCACgtgagtgcgggtcggtgtcaggggccgcgaaggggataacagagcctaagagccgttacgcacgggggcgaaaggcgcattctgctgcaagcggcggcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacgcac