1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggcgacacagaacatttcacggcatatgtggcacatcacacgcatcacaccacacccgcatcacaccacacccgcacccacaccgtgtgtgtttcatcagGTACATCACTGTGGCCAAGTCGCTGTGGGTGGCGGACTTTGCCCGCGCCGTGAAGGCCGGCTTCCCCGACTCCCGTATGCGCCCGCCCATCGCCACCATC
species | Chlamydomonas reinhardtii |
transcript | EDO96980 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTGGCCGCGGCACACACCCTGGCCATGAGCCACCCCAAGGCCGAGGGCAG GTACATCACTGTGGCCAAGTCGCTGTGGGTGGCGGACTTTGCCCGCGCCGTEST: gi|10774710|gb|AV625533.1|AV625533
genomic: GTGGCCGCGGCACACACCCTGGCCATGAGCCACCCCAAGGCCGAGGGCAGgtgcgggctg ... gtttcatcagGTACATCACTGTGGCCAAGTCGCTGTGGGTGGCGGACTTTGCCCGCGCCGT
EST: GTGGCCGCGGCACACACCCTGGCCATGAGCCACCCCAAGGCCGAGGGCAG GTACATCACTGTGGCCAAGTCGCTGTGGGTGGCGGACTTTGCCCGCGCCGTEST: gi|14226545|gb|BG845377.1|BG845377
genomic: GTGGCCGCGGCACACACCCTGGCCATGAGCCACCCCAAGGCCGAGGGCAGgtgcgggctg ... gtttcatcagGTACATCACTGTGGCCAAGTCGCTGTGGGTGGCGGACTTTGCCCGCGCCGT
EST: GTGGCCGCGGCACACACCCTGGCCATGAGCCACCCCAAGGCCGAGGGCAG GTACATCACTGTGGCCAAGTCGCTGTGGGTGGCGGACTTTGCCCGCGCNCG
genomic: GTGGCCGCGGCACACACCCTGGCCATGAGCCACCCCAAGGCCGAGGGCAGgtgcgggctg ... gtttcatcagGTACATCACTGTGGCCAAGTCGCTGTGGGTGGCGGACTTTGCCCGCGC-CG
cacaccacacccgcatcacaccacacccgcacccacaccgtgtgtgtttcatcagGTACATCACTGTGGCCAAGTCGCTGTGGGTGGCGGACTTTGCCCGCGCCGTGAAGGCCGGCTTCCCCGACTCCCGTATGCGCCCGCCCATCGCCACCATC
tttcatc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcgacacagaacatttcacggcatatgtggcacatcacacgcatcacaccacacccgcatcacaccacacccgcacccacaccgtgtgtgtttcatcagGTACATCACTGTGGCCAAGTCGCTGTGGGTGGCGGACTTTGCCCGCGCCGTGAAGGCCGGCTTCCCCGACTCCCGTATGCGCCCGCCCATCGCCACCATC
- - acacaga
- - - - - - - - - - - - - - tggcaca
- - - - - - - - - - - - - - - - - atcacac
- - - - - - - - - - - - - - - - - - -acacgca
- - - - - - - - - - - - - - - - - - - - - - - - - cacaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgtgt