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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgacagtgtgacagtgtcggaccggggttgtgcttcgtcgtcttcgggtggggctgtggtcggggagcctggcattaccagtagaagcggcgtgcatgcttaaggaatttgcacacacgcatgctgatgccgatcttcatcgcgtggccacttcctggcatcatgcagGTGTCCATCATCAACCAGATCCTGAAGGGCCAGATGTACCCGGCCGCCCCGCACATGGGCTTTGGCACCGTGGACGTGCGCGACGTGGCCGCGGCACACA

Basic information

species Chlamydomonas reinhardtii
transcript EDO96980
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10774710|gb|AV625533.1|AV625533
EST:     CCGCTGTCATCCTGGGGCCGCCGCTCAGCAAGCGCACAGACAGCGAGTCG                         GTGTCCATCATCAACCAGATCCTGAAGGGCCAGATGTACCCGGCCGCCCCG
genomic: CCGCCGTCATCCTGGGGCCGCCGCTCAGCAAGCGCACTGACAGCGAGTCGgtgggtgaca ... catcatgcagGTGTCCATCATCAACCAGATCCTGAAGGGCCAGATGTACCCGGCCGCCCCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacacgcatgctgatgccgatcttcatcgcgtggccacttcctggcatcatgcagGTGTCCATCATCAACCAGATCCTGAAGGGCCAGATGTACCCGGCCGCCCCGCACATGGGCTTTGGCACCGTGGACGTGCGCGACGTGGCCGCGGCACACA
        tgctgat  putative branch site (score: 3)