1 5' 3' | 2 5' 3' | 3 5' 3' |
CAGCAAGCACATGTGGACGGCGAACCCGGGCTACATCGTGCGTGACGGGCCCAAGACGGCGTCAGTCATGAAGAAAGACTACGTGTGGGACGAGGAGGAGgtaggttgggggtgaaggctgccggcgggcagggatatggctcgaggaggaggatggagggtgcatggggaggggactggaactgtgaaggcctgaaggg...
species | Chlamydomonas reinhardtii |
transcript | EDO96969 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCAAGACGGCGTCAGTCATGAAGAAAGACTACGTGTGGGACGAGGAGGAG ATCGCGCTGATGAAGGAGCAGGGCATGCTAGACAAGAAATTCAACCGGCGGEST: gi|10127501|gb|BE726205.1|BE726205
genomic: CCAAGACGGCGTCAGTCATGAAGAAAGACTACGTGTGGGACGAGGAGGAGgtaggttggg ... acacacacagATCGCGCTGATGAAGGAGCAGGGCATGCTAGACAAGAAATTCAACCGGCGG
EST: CCAAGACGGCGTCAGTCATGAAGAAAGACTACGTGTGGGACGAGGAGGAG ATCGCGCTGATGAAGGAGCAGGGCATGCTAGACAAGAAATTCAACCGGCGGEST: gi|10191410|gb|BE761486.1|BE761486
genomic: CCAAGACGGCGTCAGTCATGAAGAAAGACTACGTGTGGGACGAGGAGGAGgtaggttggg ... acacacacagATCGCGCTGATGAAGGAGCAGGGCATGCTAGACAAGAAATTCAACCGGCGG
EST: CCAAGACGGCGTCAGTCATGAAGAAAGACTACGTGTGGGACGAGGAGGAG ATCGCGCTGATGAAGGAGCAGGGCATGCTAGACAAGAAATTCAACCGGCGGEST: gi|22059207|gb|BQ813314.1|BQ813314
genomic: CCAAGACGGCGTCAGTCATGAAGAAAGACTACGTGTGGGACGAGGAGGAGgtaggttggg ... acacacacagATCGCGCTGATGAAGGAGCAGGGCATGCTAGACAAGAAATTCAACCGGCGG
EST: CAAGACGGCGTCAGTCATGAAGAA-GACTACGTGTGGGACGAGAAGGGAG ATCGCGCTGATGAAGGAGCAGGGCATGCTAGACAAGAAATTCAACCGGCGEST: gi|49464874|gb|BP092787.1|BP092787
genomic: CAAGACGGCGTCAGTCATGAAGAAAGACTACGTGTGGGACGAGGAGG-AGgtaggttggg ... acacacacagATCGCGCTGATGAAGGAGCAGGGCATGCTAGACAAGAAATTCAACCGGCG
EST: CCAAGACGGCGTCAGTCATGAAGAAAGACTACGTGTGGGACGAGGAGGAG ATCGCGCTGATGAAGGAGCAGGGCATGCTAGACAAGAAATTCAACCGGCGGEST: gi|8828635|gb|BE212365.1|BE212365
genomic: CCAAGACGGCGTCAGTCATGAAGAAAGACTACGTGTGGGACGAGGAGGAGgtaggttggg ... acacacacagATCGCGCTGATGAAGGAGCAGGGCATGCTAGACAAGAAATTCAACCGGCGG
EST: CCAAGACGGCGTCAGTCATGAAGAAAGACTACGTGTGGGACGAGGAGGAG ATCGCGCTGATGAAGGAGCAGGGCATGCTAGACAAGAAATTCAACCGGCGGEST: gi|10777691|gb|AV634371.1|AV634371
genomic: CCAAGACGGCGTCAGTCATGAAGAAAGACTACGTGTGGGACGAGGAGGAGgtaggttggg ... acacacacagATCGCGCTGATGAAGGAGCAGGGCATGCTAGACAAGAAATTCAACCGGCGG
EST: CCAAGACGGCGTCAGTCATGAAGAAAGACTACGTGTGGGACGAGGAGGAG ATCGCGCTGATGAAGGAGCAGGGCATGCTAGACAAGAAATTCAACCGGCGG
genomic: CCAAGACGGCGTCAGTCATGAAGAAAGACTACGTGTGGGACGAGGAGGAGgtaggttggg ... acacacacagATCGCGCTGATGAAGGAGCAGGGCATGCTAGACAAGAAATTCAACCGGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCAAGCACATGTGGACGGCGAACCCGGGCTACATCGTGCGTGACGGGCCCAAGACGGCGTCAGTCATGAAGAAAGACTACGTGTGGGACGAGGAGGAGgtaggttgggggtgaaggctgccggcgggcagggatatggctcgaggaggaggatggagggtgcatggggaggggactggaactgtgaaggcctgaaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgaag