Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCACTTCCCACGCCTGTTGCTTAAATACCCGCCAAGATGTCCAACGTCGATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAGgtcagtggccgaatggaacttctcgtcgagcgaacaagagcgtaaaccaggttggttgagcctttgatgaccgagcattttgtgactgcccgtgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO96969
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15370621|gb|BI530047.1|BI530047
EST:     ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAG                         ATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
genomic: ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAGgtcagtggcc ... gcccgtgcagATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
EST: gi|10127501|gb|BE726205.1|BE726205
EST:     ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAG                         ATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
genomic: ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAGgtcagtggcc ... gcccgtgcagATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
EST: gi|10191410|gb|BE761486.1|BE761486
EST:     ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAG                         ATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
genomic: ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAGgtcagtggcc ... gcccgtgcagATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
EST: gi|22059207|gb|BQ813314.1|BQ813314
EST:     ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAG                         ATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
genomic: ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAGgtcagtggcc ... gcccgtgcagATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
EST: gi|49464874|gb|BP092787.1|BP092787
EST:     ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAG                         ATNGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
genomic: ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAGgtcagtggcc ... gcccgtgcagATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
EST: gi|22059450|gb|BQ813435.1|BQ813435
EST:     ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAG                         ATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
genomic: ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAGgtcagtggcc ... gcccgtgcagATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
EST: gi|49460796|gb|BP088709.1|BP088709
EST:     ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAG                         ATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
genomic: ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAGgtcagtggcc ... gcccgtgcagATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
EST: gi|6545717|gb|AV391501.1|AV391501
EST:     ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAG                         ATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
genomic: ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAGgtcagtggcc ... gcccgtgcagATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
EST: gi|8828635|gb|BE212365.1|BE212365
EST:     ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAG                         ATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
genomic: ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAGgtcagtggcc ... gcccgtgcagATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
EST: gi|10777691|gb|AV634371.1|AV634371
EST:     ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAG                         ATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
genomic: ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAGgtcagtggcc ... gcccgtgcagATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
EST: gi|49459397|gb|BP087310.1|BP087310
EST:     ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAG                         ATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
genomic: ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAGgtcagtggcc ... gcccgtgcagATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
EST: gi|6544927|gb|AV390711.1|AV390711
EST:     ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAG                         ATAGTACGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA
genomic: ATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAGgtcagtggcc ... gcccgtgcagATTGTTCGGGAGAAGAACATGCAGCGTAAGTACTTCCAGGAGCAGGAGGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCACTTCCCACGCCTGTTGCTTAAATACCCGCCAAGATGTCCAACGTCGATCGTGTCGCATATATGGATAACATTCGGACGAATCAGATAACAGAGCAGgtcagtggccgaatggaacttctcgtcgagcgaacaagagcgtaaaccaggttggttgagcctttgatgaccgagcattttgtgactgcccgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG