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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGCCCAAAGCCCCCACGCCGGCGGAGCCGGCCAAGTCCCTCCTAGAAACCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAGgtgcgcaacaacgccttgtagctatagatttaaggatgcggattacaattgaagggacagcccgacaagcgggggcacgccgtacccacgccgcgaaggg...

Basic information

species Chlamydomonas reinhardtii
transcript EDO96969
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15370621|gb|BI530047.1|BI530047
EST:     CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAG                         TCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC
genomic: CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAGgtgcgcaaca ... gcacccacagTCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC
EST: gi|10127501|gb|BE726205.1|BE726205
EST:     CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAG                         TCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC
genomic: CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAGgtgcgcaaca ... gcacccacagTCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC
EST: gi|10191410|gb|BE761486.1|BE761486
EST:     CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAG                         TCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC
genomic: CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAGgtgcgcaaca ... gcacccacagTCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC
EST: gi|22059207|gb|BQ813314.1|BQ813314
EST:     CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAG                         TCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC
genomic: CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAGgtgcgcaaca ... gcacccacagTCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC
EST: gi|49464874|gb|BP092787.1|BP092787
EST:     CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAG                         TCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC
genomic: CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAGgtgcgcaaca ... gcacccacagTCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC
EST: gi|22059450|gb|BQ813435.1|BQ813435
EST:     CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAG                         CCACTGAGCCTTAGCATCATCAAGCACATGTGGACGGCGAACCCGGGCTAC
genomic: CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAGgtgcgcaaca ... gcacccacagTCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC
EST: gi|49460796|gb|BP088709.1|BP088709
EST:     CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAG                         TCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGA
genomic: CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAGgtgcgcaaca ... gcacccacagTCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGA
EST: gi|6545717|gb|AV391501.1|AV391501
EST:     CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAG                         TCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC
genomic: CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAGgtgcgcaaca ... gcacccacagTCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC
EST: gi|8828635|gb|BE212365.1|BE212365
EST:     CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAG                         TCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC
genomic: CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAGgtgcgcaaca ... gcacccacagTCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC
EST: gi|10777691|gb|AV634371.1|AV634371
EST:     CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAG                         TCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC
genomic: CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAGgtgcgcaaca ... gcacccacagTCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC
EST: gi|49459397|gb|BP087310.1|BP087310
EST:     CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAG                         TCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC
genomic: CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAGgtgcgcaaca ... gcacccacagTCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC
EST: gi|6544927|gb|AV390711.1|AV390711
EST:     CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAG                         TCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC
genomic: CCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAGgtgcgcaaca ... gcacccacagTCACTGAGCCTTAGCATCAGCAAGCACATGTGGACGGCGAACCCGGGCTAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTGCCCAAAGCCCCCACGCCGGCGGAGCCGGCCAAGTCCCTCCTAGAAACCGTGGGCCTCCCAAGCCACGTCCAAACAATACGCCAAGACCCTGAGCAGgtgcgcaacaacgccttgtagctatagatttaaggatgcggattacaattgaagggacagcccgacaagcgggggcacgccgtacccacgccgcgaaggg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccacgc